Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10600 778 / 0 CAT7 cationic amino acid transporter 7 (.1) AT5G04770 763 / 0 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT4G21120 407 / 1e-135 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 367 / 3e-120 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 331 / 7e-106 CAT8 cationic amino acid transporter 8 (.1) AT3G03720 224 / 2e-65 CAT4 cationic amino acid transporter 4 (.1.2) AT5G36940 210 / 4e-60 CAT3 cationic amino acid transporter 3 (.1) AT1G58030 210 / 9e-60 CAT2 cationic amino acid transporter 2 (.1) AT1G05940 177 / 2e-48 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241000 [exp] 906 / 0 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.001G150700 [exp] 481 / 2e-164 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.003G083700 [exp] 474 / 4e-162 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.015G133100 [exp] 407 / 3e-135 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 402 / 2e-133 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 388 / 7e-128 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 388 / 7e-128 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 363 / 1e-118 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 342 / 3e-110 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040142 [exp] 470 / 9e-160 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 467 / 1e-158 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10023271 [exp] 412 / 4e-137 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 406 / 3e-132 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 345 / 4e-111 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 340 / 2e-109 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10020320 [exp] 215 / 1e-61 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 215 / 2e-61 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 213 / 8e-61 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020305 [exp] 213 / 2e-60 AT1G58030 805 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Potri.008G017100.1 pacid=42807548 polypeptide=Potri.008G017100.1.p locus=Potri.008G017100 ID=Potri.008G017100.1.v4.1 annot-version=v4.1 ATGGAGAGCCATGGCTCCTCTTTCTCTGGCTTGGACTCTTACTTTCGAGCCCTGGCACAGACCCCAGCCCGTCTAGCCAGGCGAGCTTGTTCAGTCTCAA CATCGCATGAAGAAATGAGCCAGGTCAAAGCAAGGTCTGGTTCTGTCATGCAAAGAACTCTTCGTTGGTACGACCTTGTTGGGTTTGGCATCGGTGGTAT GGTTGGTGCTGGTGTTTTCGTCATCACTGGTCATGCCAGCCGTCTCCGCGCTGGCCCTTCAGTTGTTATCTCCTATGCCATTGCTGGTCTCTGTGCTCTG CTCTCTTCCTTCTGTTACACCGAGTTTGCCGTTGACATGCCCGTCGCCGGCGGGGCTTTCAGTTATCTCCGTATCACTTTTGGTGAATTTGCTGCGTTCT TAACCGGTGCAAATCTTATAATGGATTATGTCATGTCAAACGCTGCTGTTGCTAGGGGCTTCACTGCTTATCTAGGCTCAGCAATCGGCATCTCTACATC AAAATGGAGACTTGTCATCCATGGACTCCCTGATGGCTTCAATGAAATTGACACTTTCGCAGTTCTTGTTGTCTTAGCCATTACTCTCATCATCTGCTAC AGCACAAGAGAGAGTTCATTGGTGAACATGTTGTTAACAATTCTACACATTTTGTTCATTGGATTTGTGATACTAATGGGATTTTGGAAAGGAGATTGGA AAAACTTCACACAGCCTGCAAACCCAAACAACCCATCTGGGTTTTTCCCATTTGGAGCTCCTGGTGTGTTCAATGGAGCAGCCATGGTGTATTTGAGTTA TATTGGATATGATGCTGTTTCTACTCTAGCTGAAGAAGTCCATGACCCTGTTAAGGATATCCCCATCGGAGTTTCAGGCTCTGTTATAATTGTCACCATT CTTTATTGCCTCATGGCTGCTTCAATGTCCATGCTCCTCCCTTATGATATGATAGATGCGGACGCACCATTCTCAGCAGCATTCAGAGGGGAATCAGATG GCTGGCAATGGGTTTCTAATGTGATAGGGATGGGGGCCAGCTTTGGGATTCTTACATCATTATTAGTTGCAATGCTGGGACAAGCTAGATACTTGTGTGT GATCGGACGGTCCAATGTTGTCCCTGCTTGGTTTGCTAGGGTCCACCCAAAGACATCAACGCCTGTTAATGCTTCCGCATTTCTTGGAATCTTCACTGCA GCAATTGCGCTGTTCACTGATTTAAATGTCCTCCTCAACCTTGTATCAATAGGCACGCTATTTGTCTTCTACATGGTGGCCAATGCTTTGGTTTACAGAC GTTACGTCGCGATAGGGACGACTAATCCATGGCCTACATTATCCTTCCTGTGTTCATTTTCCTTCACCTCTATTCTATTCACTCTCATATGGCATTTCAT GCCTAATGGCAAGGGAAAAGCCTTTATGCTCGGTGCTTGCGCGGTGATAGCGATTGCAATAATACAGCTCTTTCATTGCATTGTGCCACAGGCAAGAAAG CCTGAATTTTGGGGTGTTCCGTTGATGCCATGGATACCATGTGCATCTATCTTCTTGAACATATTCCTGTTGGGGTCTCTTGATGGTCCATCCTATGTGC GGTTCGTCTTCTTTTCAGCTCTCGCTGTGCTTGTATATGTTCTGTACAGTGTCCACGCTAGCTTTGATGCTGAAGGGGGAGGCTCTATCGGTCAAAAGAA TGGCGAGATTGCGAGGGAATCAGACGAGAGCGAGGACCATATTAATTCTTTCAAAGTGTAA
AA sequence Show only first row Show all	>Potri.008G017100.1 pacid=42807548 polypeptide=Potri.008G017100.1.p locus=Potri.008G017100 ID=Potri.008G017100.1.v4.1 annot-version=v4.1 MESHGSSFSGLDSYFRALAQTPARLARRACSVSTSHEEMSQVKARSGSVMQRTLRWYDLVGFGIGGMVGAGVFVITGHASRLRAGPSVVISYAIAGLCAL LSSFCYTEFAVDMPVAGGAFSYLRITFGEFAAFLTGANLIMDYVMSNAAVARGFTAYLGSAIGISTSKWRLVIHGLPDGFNEIDTFAVLVVLAITLIICY STRESSLVNMLLTILHILFIGFVILMGFWKGDWKNFTQPANPNNPSGFFPFGAPGVFNGAAMVYLSYIGYDAVSTLAEEVHDPVKDIPIGVSGSVIIVTI LYCLMAASMSMLLPYDMIDADAPFSAAFRGESDGWQWVSNVIGMGASFGILTSLLVAMLGQARYLCVIGRSNVVPAWFARVHPKTSTPVNASAFLGIFTA AIALFTDLNVLLNLVSIGTLFVFYMVANALVYRRYVAIGTTNPWPTLSFLCSFSFTSILFTLIWHFMPNGKGKAFMLGACAVIAIAIIQLFHCIVPQARK PEFWGVPLMPWIPCASIFLNIFLLGSLDGPSYVRFVFFSALAVLVYVLYSVHASFDAEGGGSIGQKNGEIARESDESEDHINSFKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10600		CAT7	cationic amino acid transporte...		Potri.008G017100 [exp]	0	1
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	8.30	0.8999
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	9.16	0.9009
AT5G44680			DNA glycosylase superfamily pr...		Potri.003G156500 [exp]	12.16	0.8994
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	12.24	0.8992
AT5G53020			Ribonuclease P protein subunit...		Potri.012G016600 [exp]	14.17	0.7414
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	16.97	0.8875
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Potri.013G060800 [exp]	19.44	0.8601	Pt-EXP2.5,PtrEXPA11
					Potri.002G138100 [exp]	22.58	0.8660
AT5G14410			unknown protein		Potri.001G342100 [exp]	22.60	0.8830
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050300 [exp]	22.64	0.8780

Compare expression of checked genes

Potri.008G017100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.