Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08230 509 / 2e-179 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 401 / 6e-137 Transmembrane amino acid transporter family protein (.1) AT5G40780 157 / 4e-43 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 145 / 9e-39 Transmembrane amino acid transporter family protein (.1) AT3G55740 142 / 1e-37 ATPROT2, ProT2 proline transporter 2 (.1.2) AT1G24400 139 / 1e-36 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT2G39890 139 / 1e-36 ATPROT1, ProT1 proline transporter 1 (.1.2) AT2G36590 133 / 2e-34 ATPROT3, ProT3 proline transporter 3 (.1) AT1G71680 132 / 5e-34 Transmembrane amino acid transporter family protein (.1) AT1G67640 126 / 1e-31 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026700 [exp] 607 / 0 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 559 / 0 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 423 / 2e-145 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G138100 [exp] 417 / 4e-143 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G219300 [exp] 222 / 2e-67 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.010G194600 [exp] 152 / 5e-41 AT2G39890 702 / 0.0 proline transporter 1 (.1.2) Potri.008G179000 [exp] 145 / 2e-38 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.008G062900 [exp] 144 / 4e-38 AT2G39890 687 / 0.0 proline transporter 1 (.1.2) Potri.015G091600 [exp] 142 / 2e-37 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038639 [exp] 594 / 0 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10009386 [exp] 479 / 4e-167 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 383 / 7e-130 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10037913 [exp] 323 / 1e-106 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038640 [exp] 206 / 4e-62 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10041581 [exp] 142 / 2e-37 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 142 / 2e-37 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 141 / 7e-37 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10040238 [exp] 139 / 3e-36 AT3G55740 673 / 0.0 proline transporter 2 (.1.2) Lus10028251 [exp] 141 / 4e-36 AT3G55740 676 / 0.0 proline transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.008G026600.1 pacid=42806127 polypeptide=Potri.008G026600.1.p locus=Potri.008G026600 ID=Potri.008G026600.1.v4.1 annot-version=v4.1 ATGGGAACTCAACTTCCTACTTCCGTGGAAGTATCTGAAATAGATAGCGAAGAAGGGCCAAGCTCTTCCGAGCAACTTGATGCTGGAGCCTTGTTTGTGC TGAAATCAAGAGGTTCATGGCTGCACTGTGGATACCATTTGACAACATCAATTGTAGCTCCGGCTCTTCTTAGTCTTCCCTACGCACTGTCCTTGATGGG CTGGTTTCCTGGTGTTTTATGCCTGATACTGGCAGCTCTGATAACATTCTATTCCTATAACCTTCTTTCATTAGTTCTTGAGCACCATGCTCAGATAGGG AGGCGTCAGCTTAGGTTCAGGGTCATGGCCGAAGATATATTAGGACCAGCATGGGGGAGATACTTTGTTGGTCCGATTCAGTTTGGTGTATGCTATGGTG CAGTTGTTGCTTGCATTCTTCTTGGGGGGCAGAGTCTCAAGTTCATTTACTTGCTCTCTACCCCAAAGGGGAGCATGCAGCTGTACGAATTTGTCAGTAT TTTTGGCATCCTGATGCTAGTCCTGGCTCAGATTCCATCTTTCCACTCCCTACGGCATATCAACCTTGTCTCTCTAGTCCTTGCCCTTGCTTACAGTGCC TGTACTACGGCTGGTTCTGTTCATATAGGAAACTCTAAGAACGCGCCTCCAAAAGACTATTCTATCAATGGAGCTATGCAGAATCGAGTCTTTGGAGCCT TCAATGCTATTTCAATCATTGCTACAACCTACGGAAATGGAATTATTCCTGAAATACAGGCAACTGTAGCACCTCCGGTCGAGGGGAAAATGTTCAAAGG TCTACTGGTCTGCTATGCTGTCATAATAATGACATTTTTCAGTGTTGCAATCTCTGGATATTGGGCATTTGGCAATCAGACTAAGGGAGTAATTCTAATT AATTTTATGGTTGACGAAAAGCCTTCACTTCCCACTTGGGTTCTCTTGATGACCAATGTTCTCACCCTCTTGCAAGTAGCAGCCGTCAGCGTGGTTTACT TGCAGCCAACAAATGATGTGTTTGAACGAAAGTTTGCAGATGCAAAGTTGGATCAGTTCTCCATCCGCAATGTTGTGCCAAGGTTGGTTTCCCGGTCATT ATCAGTAATCATAGCCACAGCTATTGCTGCAATGTTTCCTTTCTTCGGAGATATTAATGCAGTGATTGGAGCATTTGGATTCATTCCTCTAGACTTCATT TTGCCTGTGATATTCTACAATGTGACTTTCAAGCCATCCAAGAAGGGCTTGATGTTTTGGGGAAACGCATCAATTGCCGTAATCTGTTCGGCAGTAGGAA TGTTGGGGGCAATATCCTCAATTCGGCAAATAATTCTCGATGCCAGCACGTATAGCTTGTTTGCTAATGTTTAA
AA sequence Show only first row Show all	>Potri.008G026600.1 pacid=42806127 polypeptide=Potri.008G026600.1.p locus=Potri.008G026600 ID=Potri.008G026600.1.v4.1 annot-version=v4.1 MGTQLPTSVEVSEIDSEEGPSSSEQLDAGALFVLKSRGSWLHCGYHLTTSIVAPALLSLPYALSLMGWFPGVLCLILAALITFYSYNLLSLVLEHHAQIG RRQLRFRVMAEDILGPAWGRYFVGPIQFGVCYGAVVACILLGGQSLKFIYLLSTPKGSMQLYEFVSIFGILMLVLAQIPSFHSLRHINLVSLVLALAYSA CTTAGSVHIGNSKNAPPKDYSINGAMQNRVFGAFNAISIIATTYGNGIIPEIQATVAPPVEGKMFKGLLVCYAVIIMTFFSVAISGYWAFGNQTKGVILI NFMVDEKPSLPTWVLLMTNVLTLLQVAAVSVVYLQPTNDVFERKFADAKLDQFSIRNVVPRLVSRSLSVIIATAIAAMFPFFGDINAVIGAFGFIPLDFI LPVIFYNVTFKPSKKGLMFWGNASIAVICSAVGMLGAISSIRQIILDASTYSLFANV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026600 [exp]	0	1
AT3G15353		ATMT3, MT3	metallothionein 3 (.1.2)		Potri.011G118900 [exp]	4.47	0.8494
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.009G041100 [exp]	6.40	0.8935
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.008G195200 [exp]	6.92	0.8414
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231525 [exp]	8.00	0.8763
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096400 [exp]	8.06	0.8466
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.014G029000 [exp]	18.81	0.8088
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.017G079100 [exp]	19.18	0.8316
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036100 [exp]	24.04	0.8230
AT4G08540			DNA-directed RNA polymerase II...		Potri.002G090900 [exp]	27.76	0.7592
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.008G067500 [exp]	27.92	0.8355

Compare expression of checked genes

Potri.008G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.