Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48450 461 / 4e-156 SKS3 SKU5 similar 3 (.1) AT5G51480 454 / 5e-154 SKS2 SKU5 similar 2 (.1) AT1G76160 449 / 1e-152 SKS5 SKU5 similar 5 (.1) AT4G12420 449 / 6e-152 SKU5 Cupredoxin superfamily protein (.1.2) AT1G21860 445 / 3e-151 SKS7 SKU5 similar 7 (.1) AT4G22010 444 / 5e-151 SKS4 SKU5 similar 4 (.1) AT1G21850 444 / 8e-151 SKS8 SKU5 similar 8 (.1) AT4G25240 445 / 1e-150 SKS1 SKU5 similar 1 (.1) AT5G66920 436 / 1e-147 SKS17 SKU5 similar 17 (.1) AT1G41830 434 / 5e-147 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032200 [exp] 715 / 0 AT4G12420 472 / 2e-160 Cupredoxin superfamily protein (.1.2) Potri.005G247700 [exp] 464 / 9e-159 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 462 / 5e-158 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.003G112700 [exp] 463 / 1e-157 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.014G154500 [exp] 461 / 2e-157 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.012G126400 [exp] 462 / 5e-157 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.004G180500 [exp] 458 / 2e-156 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.014G177700 [exp] 453 / 1e-153 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.002G013700 [exp] 451 / 1e-153 AT1G76160 902 / 0.0 SKU5 similar 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037941 [exp] 776 / 0 AT4G12420 519 / 2e-179 Cupredoxin superfamily protein (.1.2) Lus10023539 [exp] 684 / 0 AT4G12420 496 / 4e-170 Cupredoxin superfamily protein (.1.2) Lus10040424 [exp] 637 / 0 AT5G48450 468 / 5e-159 SKU5 similar 3 (.1) Lus10031722 [exp] 466 / 4e-159 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10031143 [exp] 466 / 4e-159 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10025860 [exp] 453 / 1e-153 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 452 / 4e-153 AT5G48450 858 / 0.0 SKU5 similar 3 (.1) Lus10030045 [exp] 448 / 2e-152 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10032241 [exp] 449 / 3e-152 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10034560 [exp] 447 / 6e-152 AT1G76160 894 / 0.0 SKU5 similar 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.008G032100.1 pacid=42805721 polypeptide=Potri.008G032100.1.p locus=Potri.008G032100 ID=Potri.008G032100.1.v4.1 annot-version=v4.1 ATGGCTTCTCTGGGCTACCCAAGGGGACTAACAGTGTGTGCAGCACTGCTAGCAGTGTTCCTTGCAAGAGCTAGTGGGATTGATATCTTTCTTGAATGGA ATGTTGCGCTTGACAATACCATCAGACCTGTTACAGTTGAACAACCAGTTATCACCATCAATGGTATGTTCCCTGGACCTCTGATCAATGCTACAACAAA CGATTTCGTCCATGTCAATGTTTTCAACAATATGGATGAGCCTTTGCTCATTACATGGAATGGTATACAACAGAGGCTAAATTCATGGCAGGATGGAGTT TCTGGGACAAACTGTCCTATTCAACCTGGTAAAAACTGGACTTACGTGTTTCAGACCAAGGACCAAATTGGTAGTTATTTCTACTTTCCTTCTATCAATT TCCAGAAAGCTGCTGGAGGATTTGGGCCAATTCGAGTCAACAATCGCAATGTTATCGCTGTCCCCTTCCCAAAACCAGAAGCTGAGTTTGATCTTCTGAT AGGTGATTGGTTTTATGACAGTTACAATAAAACCAGATCAATGATGGCCTCCATGGCAAATATTATCACCCCAGATGTTATTCTAATGAATGGAAAAGGC CCTTATGGCCATTCATTGTCAAAAGCCTATGAATCCTTCATTGTCACACAAGGAAAGACTTACAGATTCAGGATATCAAATGTTGGGAGTGCATTCAGTT TCAACTTCAGGGTTCAAAATCATAAGATGGTTTTGGTAGAAACAGAAGGGTCCTACACCAATCAGATAACACTGGATTCTCTTGACGTGCATGTTGGTCA ATCCTACTCAGTTCTCGTCACAGCTGATCAGAATGAAGCTGATTACTATATTGTGGCAAGCCCTTTGTTGCTCAACACTAGCAGTCCTGGGGGTTTCGAT GGTGTAGGGGTGCTGCACTATTCGAACTCCCTTACACCAGTTAAGGGTCCTCTCCCAGGAGGTCCTGATCCATTTGATCTGGATTCTTCGGTCAATCAAG CAAGATCTATCAGGTGGAACCTGACAGCAGGAGCTGCAAGGCCTAACCGACAAGGAGCTTTTAATGTAACAAATGTTACCTTGTCTCAAACCTTCATCCT AGATGGATCAACGGCAGAAATTGAAGGCGCACAACGCTATGCTGTCAACAATGTGTCATACTACACCTTAAACACCCCACTGAAACTGGCAGATCACTTC GTCAACGGGTCTGGTGTCTACCAACTAGATCGGTTTCCAGTTAATTTTGTCAATGCTAAAGCTGCTTATGGCGTTTCTGTTGTTACTGGAATTCACAAAG GGTGGATAGAACTTGTCTTTGTAAATAGCTTGAATACCATGGATGCATGGCATTTAGACGGTTTCGGGTTCTACGTTGTTGGATTTGGCAATGGATTGTG GGGACCTGAGGCTCGCAATGATTACAATATTTACGACCCAGTTGTCCGGTCCACCGTGCAAGTGTACCCCAACGGATGGACTGCAGTTTATGCATTCCTA GACAATCCTGGAATGTGGAACCTCCGGTCACAAAGCTTGAAAAATTGGTACTTAGGCCAGGAACTGTATATTCGAGTCTTTGACGATGATCCTAACCCTG CCAAGGAGCGTCCACCGCCTAATAACCTACTTCTATGTGGTATTTTTGCTGGTGAATCTGAGGCTCCGGCCAGCGAACCAGGCCCTGCTCCATCTCCAGG ATGGTGA
AA sequence Show only first row Show all	>Potri.008G032100.1 pacid=42805721 polypeptide=Potri.008G032100.1.p locus=Potri.008G032100 ID=Potri.008G032100.1.v4.1 annot-version=v4.1 MASLGYPRGLTVCAALLAVFLARASGIDIFLEWNVALDNTIRPVTVEQPVITINGMFPGPLINATTNDFVHVNVFNNMDEPLLITWNGIQQRLNSWQDGV SGTNCPIQPGKNWTYVFQTKDQIGSYFYFPSINFQKAAGGFGPIRVNNRNVIAVPFPKPEAEFDLLIGDWFYDSYNKTRSMMASMANIITPDVILMNGKG PYGHSLSKAYESFIVTQGKTYRFRISNVGSAFSFNFRVQNHKMVLVETEGSYTNQITLDSLDVHVGQSYSVLVTADQNEADYYIVASPLLLNTSSPGGFD GVGVLHYSNSLTPVKGPLPGGPDPFDLDSSVNQARSIRWNLTAGAARPNRQGAFNVTNVTLSQTFILDGSTAEIEGAQRYAVNNVSYYTLNTPLKLADHF VNGSGVYQLDRFPVNFVNAKAAYGVSVVTGIHKGWIELVFVNSLNTMDAWHLDGFGFYVVGFGNGLWGPEARNDYNIYDPVVRSTVQVYPNGWTAVYAFL DNPGMWNLRSQSLKNWYLGQELYIRVFDDDPNPAKERPPPNNLLLCGIFAGESEAPASEPGPAPSPGW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000400 [exp]	1.00	0.9999	MALD1.1
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	1.41	0.9994
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Potri.004G180400 [exp]	2.44	0.9992
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.005G239400 [exp]	4.58	0.9977
AT3G02100			UDP-Glycosyltransferase superf...		Potri.017G091500 [exp]	4.89	0.9975
					Potri.007G117900 [exp]	5.09	0.9969
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	6.63	0.9981
AT4G31130			Protein of unknown function (D...		Potri.007G002900 [exp]	6.92	0.9886
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163216 [exp]	7.34	0.9960
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091700 [exp]	7.34	0.9974	CHI3.4

Compare expression of checked genes

Potri.008G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.