Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12420 472 / 3e-160 SKU5 Cupredoxin superfamily protein (.1.2) AT1G21850 457 / 4e-155 SKS8 SKU5 similar 8 (.1) AT1G21860 454 / 5e-154 SKS7 SKU5 similar 7 (.1) AT1G76160 447 / 3e-151 SKS5 SKU5 similar 5 (.1) AT1G41830 445 / 2e-150 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT5G48450 443 / 2e-148 SKS3 SKU5 similar 3 (.1) AT5G51480 437 / 1e-146 SKS2 SKU5 similar 2 (.1) AT4G22010 432 / 2e-145 SKS4 SKU5 similar 4 (.1) AT4G25240 432 / 9e-145 SKS1 SKU5 similar 1 (.1) AT4G38420 423 / 1e-141 SKS9 SKU5 similar 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032100 [exp] 743 / 0 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1) Potri.003G112700 [exp] 481 / 2e-163 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 468 / 1e-158 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.012G126400 [exp] 467 / 4e-158 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.015G127200 [exp] 466 / 7e-158 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.002G021000 [exp] 460 / 3e-156 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.004G180500 [exp] 454 / 1e-153 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 453 / 2e-153 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 451 / 2e-152 AT1G76160 902 / 0.0 SKU5 similar 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023539 [exp] 751 / 0 AT4G12420 496 / 4e-170 Cupredoxin superfamily protein (.1.2) Lus10040424 [exp] 721 / 0 AT5G48450 468 / 5e-159 SKU5 similar 3 (.1) Lus10037941 [exp] 720 / 0 AT4G12420 519 / 2e-179 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 474 / 7e-161 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10028921 [exp] 464 / 6e-157 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 462 / 2e-156 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 458 / 4e-155 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031143 [exp] 452 / 6e-153 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10031722 [exp] 451 / 3e-152 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10025860 [exp] 450 / 2e-151 AT5G48450 882 / 0.0 SKU5 similar 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.008G032200.1 pacid=42808612 polypeptide=Potri.008G032200.1.p locus=Potri.008G032200 ID=Potri.008G032200.1.v4.1 annot-version=v4.1 ATGGCTCCATTGATGCATATAAAATACGTTGACCTTTGCAATTCAACTAAGGTGACGAGCAGCTCCAAGAGGGGAAGAAACATATATATGGCCATCTTCG GCAATCAAATTCTACAACTGTTTTTTGTGGCCATTCCCATACTCTTCGTCGGGATAGCCAACAGTGAGGAAATCTTTCAAGAATGGCACGTAACAATTGA CAGAACTATCAGCCCAGTATCCAACGAACAACCGGTTATCCTAATCAATGGGAAGTTCCCTGGACCCCTTATCAATGCCACAACCAATGATATGATCCAT ATTAATGTGTTTAACGATATGGACGAACCAGTTTTATTTACATGGAATGGGATACAACAAAGGCTGAACTCTTGGCAAGATGGTGTGGGCGGCACGAACT GTCCAATCGTGCCGGGCTCAAATTGGACCTATGCGTTCCAAGTCAAGGACCAAATTGGCTCTTTCTTTTACTTCCCTTCCATCAACAACCAGAAGGCTGG GGGAGGGTTTGGTCCCATTAGAGTTAACAATCGTAATGTTATCAGCGTACCTTTCCCTAGACCTGAAGATGAATTTGACCTTCTCATTGGAGACTGGTAT CCAGAGAATTACAAGAATCTTGTATACATGCTGATAGACAACTTCACGATCCCTCTTTGGATTTTAATGAATGGAAAAGGCCCATATTTGAATACTTCTA CGAAAGTTTATGAATCCTTCACGGTTGCTCAAGGGAAGACATACAGATTTAGGATATCCAACGTAGGAAATCAATGGAGTTTCAATTTTAGGATTCAGAA TCATCACATGTTGGTGGTAGAAACTGAAGGATCATACACTAATCAGATAATGGTGGACTCCCTCGATGTTCATGTTGGCCAATCCTACTCAGTTCTTGTC ACAGCTGACCAAAAGGCAGCTGATTATTACATTGTGGCAACACCAAAAATGGTTAATACCACTAAATACGGCAATCTTGTGGGCGTAGGGGTGCTACATT ATCTCAATTCTAGTACAATGGCTACTGGACCTCTTCCAAGTGGACCTGACCCGTATGATCTACAATTCTCCATTAATCAAGCCAAGTCCATCAAGTGGAA TATGACTACTGGGGCTGCTAGGCCTAATCCACAAGGAACCTTCAACGTGACCAATGTGACACTGTCACAGACATTTATCCTCACAGGATCAAGAGCTCGG GATACTCAGGGTTTTCCTTACTACACAGTCAACGATGTGTGGTACACAGAAACAGATACCCCATTAAAGCTGGCTGATCTAATGACAAATGGGTCTGGAG TCTATGAACTTGATAAATTCTCTACTAACTCTAGCAATGGAAACCTAAGACATGGAGTTTTTGTAGCAAGTGGAAACCATAAAGGGTGGTTAGAAATTGT GCTCAAGAATGATTTAGATGTTATAGATTCTTGGCATTTGGATGGGTACGGTTTCTATGTTGTTGGATTCGGTGACGGAAATTGGACTCTTGAATCTCGT AATAATTACAATCTTTATGATCCTGTAGTTCGTTCCACCATTCAGGTTTATCCTAAAAGGTGGACTGCAGTCTATGCATACCTTGACAATCCTGGGATGT GGAATTTGAGATCACAAAGTTTGAAAAATTGGTATTTGGGCCAACAACTGTACTTGAGAGTTTATGATGCTGACCCCAACCCTGCCAAGGAGAGACCGCC CCCAGATAACCTTCTTCTATGTGGAGCCTTCGGTCCCTTAGCTCCTCCCCCTCCTCCCCTTCCTCCACCTCCGTCACCTCCTGCTCCTGCTAACCCTTCT CCTTCTCAGGCATCATCGACACAAATAACATGGTATTATTACATCACTGTGATCTGCATGGTTTCAATGCTCTTCCTCGGCCAGCAATAG
AA sequence Show only first row Show all	>Potri.008G032200.1 pacid=42808612 polypeptide=Potri.008G032200.1.p locus=Potri.008G032200 ID=Potri.008G032200.1.v4.1 annot-version=v4.1 MAPLMHIKYVDLCNSTKVTSSSKRGRNIYMAIFGNQILQLFFVAIPILFVGIANSEEIFQEWHVTIDRTISPVSNEQPVILINGKFPGPLINATTNDMIH INVFNDMDEPVLFTWNGIQQRLNSWQDGVGGTNCPIVPGSNWTYAFQVKDQIGSFFYFPSINNQKAGGGFGPIRVNNRNVISVPFPRPEDEFDLLIGDWY PENYKNLVYMLIDNFTIPLWILMNGKGPYLNTSTKVYESFTVAQGKTYRFRISNVGNQWSFNFRIQNHHMLVVETEGSYTNQIMVDSLDVHVGQSYSVLV TADQKAADYYIVATPKMVNTTKYGNLVGVGVLHYLNSSTMATGPLPSGPDPYDLQFSINQAKSIKWNMTTGAARPNPQGTFNVTNVTLSQTFILTGSRAR DTQGFPYYTVNDVWYTETDTPLKLADLMTNGSGVYELDKFSTNSSNGNLRHGVFVASGNHKGWLEIVLKNDLDVIDSWHLDGYGFYVVGFGDGNWTLESR NNYNLYDPVVRSTIQVYPKRWTAVYAYLDNPGMWNLRSQSLKNWYLGQQLYLRVYDADPNPAKERPPPDNLLLCGAFGPLAPPPPPLPPPPSPPAPANPS PSQASSTQITWYYYITVICMVSMLFLGQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	1.00	0.9993	PtrAMT4-2
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	1.41	0.9993
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	1.73	0.9993
					Potri.003G126200 [exp]	2.82	0.9990
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	3.16	0.9990
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.011G064900 [exp]	3.74	0.9986
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	4.24	0.9988
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191450 [exp]	5.65	0.9985
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	8.12	0.9977	3
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	8.48	0.9983

Compare expression of checked genes

Potri.008G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.