Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52250 645 / 0 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220000 [exp] 2597 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040386 [exp] 1121 / 0 AT3G52250 573 / 2e-175 Duplicated homeodomain-like superfamily protein (.1) Lus10023504 [exp] 1094 / 0 AT3G52250 577 / 3e-177 Duplicated homeodomain-like superfamily protein (.1) Lus10036515 [exp] 1043 / 0 AT3G52250 541 / 2e-164 Duplicated homeodomain-like superfamily protein (.1) Lus10041413 [exp] 967 / 0 AT3G52250 545 / 2e-166 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G041900.2 pacid=42805906 polypeptide=Potri.008G041900.2.p locus=Potri.008G041900 ID=Potri.008G041900.2.v4.1 annot-version=v4.1 ATGCCGCCAGAGCCATTGCCGTGGGATCGGAAGGACTTCTTTAAGGAGAGGAAGCACGAGAGGTCCGAGACGACGTCTTCTTCTTTTGGTGGCGGGTCTA CGTCACGATGGAAGGATTTTTCTTATTCTTCCTCGAGTCATTATGGATCCTCTCGTGATTTCAATCGTTGGGGTCCCCACGACTTTCGCAGGCCTCCTGG TCATGGTAAGCAGGGTGGTTGGCATATGCTTGCTGAAGAATCTGGTCACTTGTACGCACCATATAGGTCCAGTGATAAGATGCTGGAAGATGAGAATTGC CGGCCATTTTTGCGTGGAGATGGAAGATATGTCCGGAACAATAGGGGTTATTTCAGCCAGAGGGATTGGAGAGGTGGTCATTCATGGGAAATGAGTAATG GGTCTTCTAACATGCCTGTGAGGCAGCATGATGTGAGTAATGATCATATGTCAGTTGATGAAATGCTAATGTTTCCCCCATCTCAACCCGCTCATTCTGA TTTTGTTGACTCATGGGATCAGCATCAATTGAAAGACCAACAAGATAATAATAAGATGGGTGGTGTCAATGGGTTGGGCACAGGCCAAAGAGGTGATAGA GAGAACTCACTAGATTGGAAGCCTCTTAAATGGACCCGTTCTGGAAGCTTGTCTTCCCGGGGGTCTGGTTTAAGTCATTCAAGTAGCTCGAAGAGCCTTG GGGGTGCAGATTCTAATGAAGGAAAGGCTGAGTTGCAACCGAAGAATGCCACTCCAGTCCATTCCCTTTCAGGGGATGTTGCTGCTTGTGTTACTTCTGC AGCACTATCTGAAGAGATTTCTTCTAGGAAGAAGGCACGCCTTGGATGGGGTGAGGGGCTGGCAAAGTATGAGAAGAAGAAAGTTGAAGGCCCAGAAACA AGTGACAACAAAGATGGAGCTGTCGTTTCTGCTAATAATGTAGAGTCCATTCATTATCAAACTTCAAACTTGGCTGAAAAGAGCCACGGAGTAATGGGCT TTTCAGACTGTGCATCTCCTGCTACGCCTTCCTCTGTTGCTTGTAGTTCATCACCAGGTTTAGAGGAGAAAACATTTGTGAAGTCAACAAATGCTGATAA CGTTGTTAGTAACTCATGTGGTTCACCTAGTGTTGGTTCTCAAAGTCAAATTGAGGGATTGTGTTTTAATTTAGAGAAGATGGATGTTAGTTCTGTAGCT AACCTGGGTTCTTCACTATCTGAACTGCTTCAGTCTGATGATCCAAGTTCTGTGGACTCTAGTTTTGTGAGGTCTACTGCAATGAATAAGCTGCTTGCAT GGAAAGGTGACATTTCAAAGTCACTGGAATTGACAGAATCTGAAATTGATTCTCTTGAAAATGAACTTAAGTCCATGAGATTTGAATCTGGAAACAGATG TCCTTGTCCGGCAGCATCCAGTCCTCGTCCATTTGATAGTGATGCAAAACCTTGCAATGTACAGGGGGTTGCCTCTAACAGTGTCCCACGACCTTCTCCC TTGCAAGTTGCATCATGTGGGGATGGAATTGTGGAGAAGGTTTCTTTTTGCAATGGTGAGTTGGAAGAAGCTCATGCTGATGTTAAGGAGGATGATATTG ATAGTCCTGGAACTGCTACATCTAAACTTGTTGAACCAGTATTTTTGGCAAGGGCAGATTCATCGACTGTCACTGTGAAAGATGATTTTGATGCTATTCA GTCTGCAAGGATGAACTTGAAAGGTGTAGTTCCTTGTGCTGATGAGGAAGTGACTGGCATATTTACTTGCAAGGAAGATTTACCTTCTGGTGATGTGATT TCAGACACATATGGAGAAGATAATTTATGTAATCTAATACTGGCCTCCAATAAACAATCTGCGAGTAGGGCATCTGAAGTATTTAATAAACTATTGCCTA GTGAGCAGTGTAGGTTTGATTTTTCAGGTGTTATCAATGGATCCTCTTGGCAGAGTGATGCCTTAGTTGTAGAAAATTTTGCTATGAGGAAGCGGCTATT AAGATTTAAGGAGAGAGCTGTAACCCTGAAGTTTAAAGCCTTTCATCATCTGTGGAAGGAAGATATGCGATTGCTTTCTATAAGGAAACATCGTGCGAAG TCTCATAAGAAATGTGAACAAAGCTTGCGGACAACTCAAAGTGGGTTTCAAAAGCATCGTTCTTCCATTCGTGCTCGATTCTCTTCTCCTGCTGGAAATT TGAACCTGGTCCCTACAACAGAGATACTTAACTTCACAAGCAAGCTGCTTGCAGATTCTCAGCTCAAGCTTTACAGGAATGCTTTGAAAATGCCAGCATT AATTTTGGACAAGAAAGAGAAGATAGTATCACGGTTTATCTCCAGTAATGGATTGGTTGAAGATCCTTGTGCTGTTGAGAAGGAAAGAGCTATGATCAAT CCCTGGACTTCTGATGAAAAAGAAATTTTCATGCATAAGCTTGCGACTTTTGGGAAGGATTTCAGAAAAATTGCTGCTTTTCTTGATCACAAGTCAACTG CAGACTGTGTTGAATTCTATTACAAAAACCACAAATCTGATTGTTTTGAAAAAACCAAGAAGAGTAAACAAACTAAATCTTCTACTAACTACTTGGTTGC ATCAAGTACAAAATGGAATCGTGAATTGAATGCTGCGTCGCTTGATATTTTTGGTGCTGTGATGGCAGCTGGTGCTGACCATGCTATGAACAGTCGGCGG TTGTGCTCTAGTAGAATCTTTTCGAGTGGCTACCGTAATTCTAAAATAACGGAAGGTTGTGATGATGGTATTTTAGAAGGATCAAGTATCTTGGATGTTC TTGGGAGTGAAAGAGAGACTGTTGCTGCTGATGTTTTAGCAGGTATCTGTGGTTCAATGTCCTCTGAGGCCATGAGTTCTTGTATCACTACCTCTGTTGA TCTTGTAGAGGGCTATCGAGAGCGGAAGTGCCAAAAGGTGGATTCTGTTGCGAAGCCACCTTTGACATCTGATGTTACGCGGAATTTCGATGAAGAGACC TGTTCAGATGAGAGTTGCGAGGAGATGGATCCTACTGATTGGACAGATGAGGAGAAGTCCATGTTTATACAAGCTGTATCATCCTATGGAAAGGATTTTG CAATGATCTCCCATTTTGTCAGGACAAGAACTAGGGACCAGTGCAAGGTGTTTTTTAGCAAGGCCAGGAAGTGCCTTGGACTGGATTTGATGCATCCTGG ACATAGAAATTTTGGAACACCAGTTAGCGATGTTGGAAATGGAGGTGGGAGTGACACAGAAGATGCCTGTGCTATAGAGACTGGATCTGCTATTTCCAGT GATAAACTAGACTCTAAGATTGATGAGGACTTGCCGCCGTCTGTCATGAATACAGAGCATAATGAATCTGATGCAGAGGAGAGGATAAGGTTGCATTCTG ACCTGGATGGAACTGAAGACAATAATGCATCTGGGATATTAGATCATAATGATTCCAAGATTGTGGATAAAATGGTTTCTGATCCAGCTGAGGCGGGGAA GAGGGCTGATCTAGCTTTGGTTGTTGACAGCAAAGTCCTGAATTCTGTTAATCAGTTGGAGTCTCTGCAGGCCCAGAAAGTGTTGATTGTGTCAATTAAT GCAGAATCTGAAAGAGATCAAGCGGCTGACAAGACTGTTTCTGTTGCTGAAGCAGGGCCTGTTGTAGGCACAGTTGATGCCAGCACATCCAATGCAAACA CTGCAGTTGAGTTGAAAGCTGTAGCTGAGGTCTCAAATGATGTTACTGGACAAGAACTTCTGTTGCCTGAAAAAAGTTTGTGTAGCTCAAGTGGTTTGAT GCAAGATTCAACCAGCAATGCCTCACACCATCGTGTAAATATGGATTCTTGTTCAGATATCAGTCGCTGTTCAGAAAATATACATCAAGTCTCTGTCCAT TTGGAATCTGTGGAAAAGCCTCCTGTCATCTCATTGCCACAGGAGAATGATCTTTCTATAATGAATTCTGTAGTACAAGATTCCGTGGTCATCCAATATG AGAAAAAGCATGAACAACTTCAGGAGTGTAGAGATGAGCAGGGTAAAACATCTTTTTGTAGAGATGACTACTTCCAGCATCTGTCTGGTCACCCTCTGAT GAGCCAGAATGATTCCTCCCAGATTCTCAGGGGTTATCCGCTGCAAATTCCAACAAAGAAAGAGATGAATGGGGATAATTATGCCAGACCACTTTCTGAA GCTCGAAGCTTTCCAAACTCTGAAAAGAATGTCACCTCTGAAAAGAATGTCACCAGTCAGTTTGAAGCTGAGGATTGCTATCTTCAAAAGTGTAGCGGCT CAAAATCTCAGCATTCAGTGTCTGAGCTCCCATTCCTGTCTCAACGTTTTGAACATGGAAGTGATTGTCCAAGAGATCATTCACGGAGGTCTTCAGATAT GGAAAAACCATGTAGGAATGGTGATGTTAAACTGTTTGGTAAAATACTCAGTAACCCCTTGCAAAAGCAGAATTCTATTGCCCATGAGAATGGTGAAAAG GAGGCCCCGCATCTTAAGCCAGCAGGCAAGTCAGCAACTTTTAAATTAACTGGTCACCACCCTACAGAGGGTAACATGGCTTTCTTAAAGTGTGATCGTA ATAATCAGCTTGGCCCTGAGAATTTTCCCCTGAGCCATGGATTCTGGGATGAGAACAGAACACAGACAGGGTTACCTGATTCTGCTGCTTTACTGGCAAA GTATCCTGCTGCATTTAGCAATTATCCTGTGCCATCATCCAAAATGCCACAGCAGACATTGCAATCTGTTGTCAAGAGTAACGAGTGTAATCAGAGTGGC CTGTCTGTTTTTCCTTCAAGGGATGTAAGTGGGACTAATGGAGTGGTGGATTATCAATTGTACAGGAGTCACGACAGTACTGGAGTGCAGCCATTTGCGG TAGATATGAAGCAGCGGGAGGATATATTTGTGGAGATGCAGAGACTGAATGGACAGCAAGCGAGGGGGATGGTAGGGATGAATGTTGTAGAAAAGGGGGC GATTCTTGTTGGGGGACCATGCACGGGTGTTTCTGATCCTGTGGTAGCCATTAAAAGGCACTATGCCAAAACTGATCAGTATGGGGGGCAAAATGGAACC GTCTTTAGAGAAGAAGAATCTTGGAGAGGCAAGGGCGACTTAGGCAGGTAG
AA sequence Show only first row Show all	>Potri.008G041900.2 pacid=42805906 polypeptide=Potri.008G041900.2.p locus=Potri.008G041900 ID=Potri.008G041900.2.v4.1 annot-version=v4.1 MPPEPLPWDRKDFFKERKHERSETTSSSFGGGSTSRWKDFSYSSSSHYGSSRDFNRWGPHDFRRPPGHGKQGGWHMLAEESGHLYAPYRSSDKMLEDENC RPFLRGDGRYVRNNRGYFSQRDWRGGHSWEMSNGSSNMPVRQHDVSNDHMSVDEMLMFPPSQPAHSDFVDSWDQHQLKDQQDNNKMGGVNGLGTGQRGDR ENSLDWKPLKWTRSGSLSSRGSGLSHSSSSKSLGGADSNEGKAELQPKNATPVHSLSGDVAACVTSAALSEEISSRKKARLGWGEGLAKYEKKKVEGPET SDNKDGAVVSANNVESIHYQTSNLAEKSHGVMGFSDCASPATPSSVACSSSPGLEEKTFVKSTNADNVVSNSCGSPSVGSQSQIEGLCFNLEKMDVSSVA NLGSSLSELLQSDDPSSVDSSFVRSTAMNKLLAWKGDISKSLELTESEIDSLENELKSMRFESGNRCPCPAASSPRPFDSDAKPCNVQGVASNSVPRPSP LQVASCGDGIVEKVSFCNGELEEAHADVKEDDIDSPGTATSKLVEPVFLARADSSTVTVKDDFDAIQSARMNLKGVVPCADEEVTGIFTCKEDLPSGDVI SDTYGEDNLCNLILASNKQSASRASEVFNKLLPSEQCRFDFSGVINGSSWQSDALVVENFAMRKRLLRFKERAVTLKFKAFHHLWKEDMRLLSIRKHRAK SHKKCEQSLRTTQSGFQKHRSSIRARFSSPAGNLNLVPTTEILNFTSKLLADSQLKLYRNALKMPALILDKKEKIVSRFISSNGLVEDPCAVEKERAMIN PWTSDEKEIFMHKLATFGKDFRKIAAFLDHKSTADCVEFYYKNHKSDCFEKTKKSKQTKSSTNYLVASSTKWNRELNAASLDIFGAVMAAGADHAMNSRR LCSSRIFSSGYRNSKITEGCDDGILEGSSILDVLGSERETVAADVLAGICGSMSSEAMSSCITTSVDLVEGYRERKCQKVDSVAKPPLTSDVTRNFDEET CSDESCEEMDPTDWTDEEKSMFIQAVSSYGKDFAMISHFVRTRTRDQCKVFFSKARKCLGLDLMHPGHRNFGTPVSDVGNGGGSDTEDACAIETGSAISS DKLDSKIDEDLPPSVMNTEHNESDAEERIRLHSDLDGTEDNNASGILDHNDSKIVDKMVSDPAEAGKRADLALVVDSKVLNSVNQLESLQAQKVLIVSIN AESERDQAADKTVSVAEAGPVVGTVDASTSNANTAVELKAVAEVSNDVTGQELLLPEKSLCSSSGLMQDSTSNASHHRVNMDSCSDISRCSENIHQVSVH LESVEKPPVISLPQENDLSIMNSVVQDSVVIQYEKKHEQLQECRDEQGKTSFCRDDYFQHLSGHPLMSQNDSSQILRGYPLQIPTKKEMNGDNYARPLSE ARSFPNSEKNVTSEKNVTSQFEAEDCYLQKCSGSKSQHSVSELPFLSQRFEHGSDCPRDHSRRSSDMEKPCRNGDVKLFGKILSNPLQKQNSIAHENGEK EAPHLKPAGKSATFKLTGHHPTEGNMAFLKCDRNNQLGPENFPLSHGFWDENRTQTGLPDSAALLAKYPAAFSNYPVPSSKMPQQTLQSVVKSNECNQSG LSVFPSRDVSGTNGVVDYQLYRSHDSTGVQPFAVDMKQREDIFVEMQRLNGQQARGMVGMNVVEKGAILVGGPCTGVSDPVVAIKRHYAKTDQYGGQNGT VFREEESWRGKGDLGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	0	1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	1.41	0.9384
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	1.41	0.9495
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	1.73	0.9270
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	3.16	0.9217
AT3G45830			unknown protein		Potri.001G233800 [exp]	3.46	0.9189
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	3.46	0.9264	MYA1.1
AT3G49490			unknown protein		Potri.012G007000 [exp]	4.69	0.9087
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	6.00	0.9108
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	6.70	0.9056
AT5G22450			unknown protein		Potri.010G238400 [exp]	7.00	0.9126

Compare expression of checked genes

Potri.008G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.