Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28550 294 / 2e-94 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 276 / 8e-88 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 270 / 3e-86 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 196 / 2e-56 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT3G54990 149 / 3e-40 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT1G51190 152 / 5e-40 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 147 / 4e-39 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G57390 149 / 6e-39 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT3G20840 149 / 1e-38 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 145 / 1e-37 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216200 [exp] 682 / 0 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 327 / 2e-106 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 321 / 3e-104 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 281 / 2e-88 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 280 / 2e-88 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G018400 [exp] 153 / 1e-40 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 155 / 2e-40 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 152 / 4e-40 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G185300 [exp] 148 / 5e-40 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026477 [exp] 288 / 2e-93 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 290 / 2e-92 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10015055 [exp] 281 / 5e-89 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10019905 [exp] 280 / 2e-88 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10041595 [exp] 276 / 5e-88 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 276 / 4e-87 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 275 / 9e-87 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 276 / 3e-86 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10036141 [exp] 273 / 7e-86 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10004990 [exp] 268 / 3e-83 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.008G045300.1 pacid=42806969 polypeptide=Potri.008G045300.1.p locus=Potri.008G045300 ID=Potri.008G045300.1.v4.1 annot-version=v4.1 ATGTTGGATCTCAATCTTGGTATCACCTATAGTGATTCATCTTGTGATGATAACAACAAGAATGGTATGATGGTAATTGTTGATGTCGAGAACCACCATC ACCAAGAAGAAGAAGAAGCTTCGAGGACTCGTCAAATGGAAGATTCAGCCGCTTCAAACTCCTCCACTATCAACACTACAGAAGATGAAAACTCCTCAAA CAACAGTAACTCTGCTTTCATTTTTGATATCTTGAAGAAAGATGAAAATTTTACCAGCACTACCACCATTGATGCTTCAAAGCAGACAAACCCAAACTGT GATTTCACTACCCAACAACTTTCTCCTCAAAGAAGTGGGTTGGAATTTAATTTGCAGCCGGGCTTGGCTGGAACAACAGCTACAAGACCACAGTGGTTGA AGCTTTCACAGATGGGGTCTAGTGGGGAGGCAGAACTGAGAATTGTGCAGCAAAAACAGCAGCAAGCGAGGAAGAGTAGGAGAGGACCAAGGTCTAGAAG CTCACAGTATAGAGGAGTGACGTTTTATAGGAGAACTGGGAGATGGGAGTCACATATCTGGGATTGTGGGAAGCAAGTATATTTAGGTGGGTTTGACACT GCTCATACTGCTGCAAGGGCATACGATCGAGCAGCAATTAAGTTTCGGGGAGTTGATGCAGATATCAACTTTAATCTAAGCGATTATGAAGAAGATATGA AGCAGATGAAAAACCTTAACAAAGAAGAATTTGTTCACATCCTTCGTCGCCAAAGCACCGGTTTCTCACGAGGTAGCTCAAAATACAGAGGTGTGACTCT TCACAAATGTGGCAGATGGGAAGCTCGAATGGGGCAATTCCTTGGAAAGAAGTATATTTATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCT TATGACAAGGCAGCCCTCAACTGCAATGGAAGGGAAGCAGTAACCAATTTCGAGCCTAGCGTTTATAAAGGAGATACGGTTTTCGATACGAATTATGGAG GAAGTGGCCACAATCTTGATTTGAGCCTTGGAATTTCTCAGCCAACGAATGATCCTAAGGGGAATGACAATTTGGGAGATGGCCATTGTAGTTTTGGTGG TTGTGAAATACCCATCAAAGAGAGACAAGCGAAGGCTGAGGGCACTGCTGCTGCACGTATGGGTTTAGAGACGCTTCATGGTCTACCAATAGCATCGAGG AACCTTCCGACATGGTCTGGCATGTTCCCTGGTTTAGCATCAAGCTATGAGGAAAGGACTCCGGAGAAGAGGTTTGAAGCAGTTTCTCCACCGAGATTCT CAAGCTGGCCATGGCAGATAAATGGCAGCAACAGTGTTGCTGCTACAATGCCACAGCTCTGTGTTGCAGCATCATCAGGATTCTCTTCTTCGACCAAAAC TGTTCCTTCAGCTACTCTTCCATTCAACCAACAGAACCATTTCGCCAACAACAACCCGCGACTTGCTGCCTTCACCACATCTGCCACCAACCCCTCGTTT TACTACTCTTATACGAGCTAA
AA sequence Show only first row Show all	>Potri.008G045300.1 pacid=42806969 polypeptide=Potri.008G045300.1.p locus=Potri.008G045300 ID=Potri.008G045300.1.v4.1 annot-version=v4.1 MLDLNLGITYSDSSCDDNNKNGMMVIVDVENHHHQEEEEASRTRQMEDSAASNSSTINTTEDENSSNNSNSAFIFDILKKDENFTSTTTIDASKQTNPNC DFTTQQLSPQRSGLEFNLQPGLAGTTATRPQWLKLSQMGSSGEAELRIVQQKQQQARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT AHTAARAYDRAAIKFRGVDADINFNLSDYEEDMKQMKNLNKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARA YDKAALNCNGREAVTNFEPSVYKGDTVFDTNYGGSGHNLDLSLGISQPTNDPKGNDNLGDGHCSFGGCEIPIKERQAKAEGTAAARMGLETLHGLPIASR NLPTWSGMFPGLASSYEERTPEKRFEAVSPPRFSSWPWQINGSNSVAATMPQLCVAASSGFSSSTKTVPSATLPFNQQNHFANNNPRLAAFTTSATNPSF YYSYTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.008G045300 [exp]	0	1
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.008G183600 [exp]	1.73	0.8458
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	2.00	0.8075
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.010G216200 [exp]	4.89	0.7771
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.001G442600 [exp]	6.00	0.7649
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Potri.006G066800 [exp]	6.40	0.7411
AT5G06440			unknown protein		Potri.006G201000 [exp]	8.94	0.7796
AT4G26455		WIP1	WPP domain interacting protein...		Potri.001G472000 [exp]	11.00	0.7792
AT5G63550			DEK domain-containing chromati...		Potri.012G102500 [exp]	11.83	0.7979
AT2G36090			F-box family protein (.1)		Potri.006G208400 [exp]	14.69	0.7920
					Potri.010G002600 [exp]	15.29	0.7561

Compare expression of checked genes

Potri.008G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.