Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13550 920 / 0 SULTR4;1 sulfate transporter 4.1 (.1) AT3G12520 901 / 0 SULTR4;2 sulfate transporter 4;2 (.1.2) AT3G51895 373 / 7e-120 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G08620 372 / 1e-119 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT4G02700 354 / 1e-112 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G23090 353 / 2e-112 SULTR3;3, AST91 sulfate transporter 91 (.1) AT1G22150 348 / 1e-110 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 342 / 5e-108 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT3G15990 340 / 2e-107 SULTR3;4 sulfate transporter 3;4 (.1) AT5G19600 322 / 2e-100 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G211400 [exp] 1160 / 0 AT5G13550 898 / 0.0 sulfate transporter 4.1 (.1) Potri.005G167300 [exp] 394 / 9e-128 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 382 / 2e-123 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G213500 [exp] 369 / 2e-118 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 367 / 2e-117 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 360 / 4e-115 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 358 / 4e-114 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 357 / 6e-114 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 348 / 2e-110 AT1G23090 998 / 0.0 sulfate transporter 91 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040319 [exp] 973 / 0 AT5G13550 962 / 0.0 sulfate transporter 4.1 (.1) Lus10023440 [exp] 969 / 0 AT5G13550 955 / 0.0 sulfate transporter 4.1 (.1) Lus10030321 [exp] 858 / 0 AT5G13550 830 / 0.0 sulfate transporter 4.1 (.1) Lus10003294 [exp] 572 / 0 AT5G13550 674 / 0.0 sulfate transporter 4.1 (.1) Lus10041111 [exp] 387 / 5e-125 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10029616 [exp] 378 / 8e-122 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 373 / 2e-119 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 359 / 2e-114 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 347 / 3e-109 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10039364 [exp] 346 / 1e-108 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00916 [poplar] [flax] Sulfate_transp Sulfate permease family CL0502 [poplar] [flax] STAS PF01740 [poplar] [flax] STAS STAS domain
Representative CDS sequence Show only first row Show all	>Potri.008G049500.1 pacid=42807576 polypeptide=Potri.008G049500.1.p locus=Potri.008G049500 ID=Potri.008G049500.1.v4.1 annot-version=v4.1 ATGGAGAGAACCTTCGCCTCTTCAAGCTCTCGGGATCTCCCCACAATCTCTGTACCCTCCTCTTCCTCTTCATCACTCAGACCCTCCATGCCGACCCGAC CCGTCAAAATCATTCCTCTTCAACATCCAAACACGACGACGTCTCCCTCCTTGAATCCCCTGCCTGGGGCCCTGTTCTCGAGATGGACAGCAAAAGTGAA ACGAACCACCCTGGCTCAGTGGATCGACACGTTTCTCCCTTGTTGCCGTTGGATTAGAACTTATAAATGGCGCGAGTATTTCCAGCCTGATCTCATGGCC GGTCTCACCGTCGGTGTCATGCTCGTTCCCCAGGCAATGTCTTATGCAAAATTGGCAGGACTGCACCCAATTTATGGATTATACACTGGTTTTATACCGA TATTTGTGTATGCCATATTTGGGTCATCTCGGCAACTTGCAATTGGACCGGTGGCATTGGTTTCTCTGCTAGTCTCTAATGTACTGGGTGGAATTGTCAA TTCATCTGATGAGTTATACACAGAACTTGCGATATTGTTGGCATTTATGGTTGGAATATTGGAATGCATAATGGCACTTTTGAGGCTTGGATGGCTTATC CGCTTCATCAGCCACTCTGTGATTTCTGGCTTCACTAGTGCTTCAGCCATTGTTATTGCACTGTCCCAAGCAAAGTATTTCTTGGGGTATGATATTGTAC GAAGTAGCAAGATTGTGCCGTTGATTAAAAGCATAATATCTGGAGCACATAAGTTCTCTTGGCCTCCTTTTGTGATGGGATCTTGCATTCTTGCAATACT TTTGGTCATGAAACATTTGGGAAAATCAAGGAAGCAGTTCAGGTTCCTACGGGCAGCAGGTCCACTTACAGCAGTTGTTTTGGGTACACTTCTTGTGAAA ATGTTTCGTCCATCCTCGATTTCTTTGGTAGGAGAGATACCCCAGGGACTCCCAAGCTTCTCTTTTCCGAAAAAATTCGAGTATGCAAAGTCTTTAATTC CAACAGCAATGCTTATTACTGGAGTAGCCATATTGGAATCTGTTGGGATTGCTAAAGCATTGGCAGCAAAGAATGGGTATGAGTTGGATTCAAGTCAAGA GTTGTTCGGTCTTGGTTTGGCCAATATCATGGGCTCATTATTTTCAGCATACCCTTCAACAGGCTCATTTTCTAGGTCAGCTGTAAATAATGAAGGTGGG GCTAAAACCGGCTTATCTGGAGTTGTAGCTGGAATAATTATGGGCTGTTCTCTTTTATTCTTGACTCCGTTATTTGAATACATACCACAGTGTGCTCTAG CTGCAATAGTAGTATCTGCTGTGATGGGCCTGGTGGATTATGATGAGGCTATCTTCTTATGGCGTGTGGATAAGAAAGATTTTGTTCTTTGGATCATTAC CAGTACTACAACATTGTTCCTTGGGATTGAGATTGGTGTCCTTGTTGGGGTTGGTGCATCACTTGCTTTTGTCATCCAAGAATCTGCAAATCCACACATT GCTGTCTTGGGACGTCTTCCTGGCACCACCGTCTACAGAAATATTGAACAGTATCCAGAAGCATATACTTACAATGGAATTGTAATTGTTCGCATTGATG CACCCATCTATTTTGCTAATATAAGTTTCATAAAAGACAGGTTACGGGAATACGAAGTTGATGCTGACAAATCTTCCAGACGTGGACCAGAAGTTGAAAA GATTTATTTTGTGATTTTAGAGATGTCACCTATTACATACATAGACTCCAGTGCTGTTCAAGCATTGAAAGACTTGTACCAGGAGTACAATTCACGGGAC ATTCAGATCTGTATTTCCAATCCAAACCGAGATGTTCTGCTGACCTTAACAAAAGCTGGTATTGTAGAGCTGCTTGGTAAGGAGCGGTACTTTGTGAGAG TGCATGATGCTGTTCAAGTTTGCCTTCAGCATGTTCAGAGCTTAAGCCAATCTCCTAAGAAACCAGATCCTTTTGCTGAGGATAAACCAAGAATCTTTAA AAGGTTATCGAAGCAGAGGGAAGAGGATTTATCAATAGCAGAGTTAGAGTCAGGTGATAATAAAACCTCTGCTCCCAAGTATACAAAGCCGCACTTGGAG CCATTGTTGTCTCGAAAGTCTTGA
AA sequence Show only first row Show all	>Potri.008G049500.1 pacid=42807576 polypeptide=Potri.008G049500.1.p locus=Potri.008G049500 ID=Potri.008G049500.1.v4.1 annot-version=v4.1 MERTFASSSSRDLPTISVPSSSSSSLRPSMPTRPVKIIPLQHPNTTTSPSLNPLPGALFSRWTAKVKRTTLAQWIDTFLPCCRWIRTYKWREYFQPDLMA GLTVGVMLVPQAMSYAKLAGLHPIYGLYTGFIPIFVYAIFGSSRQLAIGPVALVSLLVSNVLGGIVNSSDELYTELAILLAFMVGILECIMALLRLGWLI RFISHSVISGFTSASAIVIALSQAKYFLGYDIVRSSKIVPLIKSIISGAHKFSWPPFVMGSCILAILLVMKHLGKSRKQFRFLRAAGPLTAVVLGTLLVK MFRPSSISLVGEIPQGLPSFSFPKKFEYAKSLIPTAMLITGVAILESVGIAKALAAKNGYELDSSQELFGLGLANIMGSLFSAYPSTGSFSRSAVNNEGG AKTGLSGVVAGIIMGCSLLFLTPLFEYIPQCALAAIVVSAVMGLVDYDEAIFLWRVDKKDFVLWIITSTTTLFLGIEIGVLVGVGASLAFVIQESANPHI AVLGRLPGTTVYRNIEQYPEAYTYNGIVIVRIDAPIYFANISFIKDRLREYEVDADKSSRRGPEVEKIYFVILEMSPITYIDSSAVQALKDLYQEYNSRD IQICISNPNRDVLLTLTKAGIVELLGKERYFVRVHDAVQVCLQHVQSLSQSPKKPDPFAEDKPRIFKRLSKQREEDLSIAELESGDNKTSAPKYTKPHLE PLLSRKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Potri.008G049500 [exp]	0	1
					Potri.018G018700 [exp]	2.00	0.7905
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	4.47	0.8179
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Potri.015G126900 [exp]	6.00	0.7963	Pt-ATTPPA.2
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	9.27	0.8030
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	18.30	0.7883
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Potri.010G225200 [exp]	19.62	0.6852
AT5G64880			unknown protein		Potri.005G083900 [exp]	23.06	0.7758
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.011G104900 [exp]	27.49	0.7251	Pt-PSCLRR52.52
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203200 [exp]	28.10	0.7510
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	32.86	0.7587

Compare expression of checked genes

Potri.008G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.