Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37650 568 / 0 GRAS SCL9 GRAS family transcription factor (.1) AT1G07530 554 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 525 / 5e-178 GRAS GRAS family transcription factor (.1) AT2G29065 484 / 8e-163 GRAS family transcription factor (.1) AT1G07520 483 / 2e-161 GRAS GRAS family transcription factor (.1) AT5G59450 462 / 1e-154 GRAS SCL11 GRAS family transcription factor (.1) AT3G46600 440 / 3e-148 GRAS GRAS family transcription factor (.1.2.3) AT1G50600 244 / 2e-71 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 229 / 4e-67 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 223 / 2e-65 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202300 [exp] 992 / 0 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 726 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 649 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 607 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 597 / 0 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 593 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 557 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033300 [exp] 539 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242000 [exp] 525 / 3e-178 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023404 [exp] 850 / 0 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 831 / 0 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 615 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10040790 [exp] 569 / 0 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 559 / 0 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 538 / 0 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10040787 [exp] 527 / 3e-179 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 493 / 4e-165 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 492 / 1e-164 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 467 / 2e-160 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.008G057400.4 pacid=42808595 polypeptide=Potri.008G057400.4.p locus=Potri.008G057400 ID=Potri.008G057400.4.v4.1 annot-version=v4.1 ATGATCATGGATCAGTCCTTAAGAGGTTTATATGGTTCTGTAAATGGATTGAAACTAAGCAATGAAACCCAATCTGCTTCATCGGTTCAGGATCTTGTTA ATGCGTTCAAGTTGGATAACAACTGTGTCAACCAAAACTATGTAAATAGTACTCGTGTTCCGCCTGATTCAACACTAAGTAACTCAGTTCTGTCCGCAAG CATGAGTCAAGAGGGAGATTCTCATGAAGATTTTGATTTCAGTGATGTGGTTCTGAAATATATTAGCAAGATGCTAATGGAAGAGGAAATGGAAGAGAAG ACATGTATGTTTCAAGAATCTTCAGCGGCACTCCTAGCTGCGGAGAAATCGTTGTATGAGCTTATTGGGGAGAAGCATCCTTCTGCACCTGATGATCCTG TACAATTTTTAGATCAAAATCATGAAAGGCCAGATGAAAATCATGATTTGAATTGTAGTAATTGTACAAGCAGTACAAGCAGCAGCAGTGGCAGTAGCTT GTTGGATCATGGGTCGACTTGTGATCTTGGCGAGTACAAGTCCTCGAGACATGCTTCTCAGTCATCCTATAGTCCAGGGAACAGCAGTGTTACTGTAGAT GGATTTGTCGACTCTCCAGTTGGTCCTAATATGGTTGCTGAGATATTTGGGGAGAGTGAGTCTGTTATGCAGTTTAAGAAAGGGTTTGAGGAGGCCAGTA AGTTCATTCCAAATGGCAATCTGCTTATTGATTTGGAGAGTAAGGGCTTGTTTCTAAAAGACCTGAAGGAAGATGTCAAGGATGTGTTAGCTACGGCAGG GGAGAAGCGTGAGAATGATAATTACGCAGATGGTTCGAGGGGGAAGAAGAATCCTCATCCTGAGGAGTCGGCTTTAGAGGGAGGTAGGAGTAACAAGCAG TCTGCAGTTTACTCTGAATCAACTGCGAGTCCAGCGGATTTTGACATGGTATTGCTCAATTGTGGAAAAGATGACTCTGCCCTCCAAGCAGCCTTGCATA ACGGGGAAAGCAAGAGTGTACAGCAGAATGGACAAGCCAGAGGATCGAGTGGTGGAAAAGCTCGAGGTAAGAGGCAGGGAGGTAAGAGGGATGTGGTGGA TTTGAGAACTCTCTTGACCCTTTGTGCACAAGCTGTTGCAGCAGATGACCGGAGGAGTGCAAATGACCTGCTGAAGCAAATCAGACAGAATGCTCCATCG ACAGGGGATGCCATGCAGAGACTAGCCAATATTTTTGCTGATGGTCTCGAAGCACGCTTGGCTGGCTCGGGAACCCAGATTTACAGAGCACTTATTTCCA AGCCAACATCAGCTGCTGATGTTTTGAAAGCTTACCACATGTTTCTTGCCGCTTGTCCGTTTAGGAAGCTGTCTAATTTCTTCTCAAATAAAACAATTAT GAATATAGCTGAAAATGCATCAAGGGTTCACATTGTTGATTTTGGCATCATGTACGGTTTCCAATGGCCCTGCCTTATTCAGCGCCTCTCATCCAGACCT GGAGGACCTCCCCATCTGCGGATTACTGGGATTGATCTCCCAAATCCAGGTTTCCGACCAGCAGAAAGGGTTGAGGAGACAGGACGCCGCTTAGCAAATT ATGCGAACACTTTCAAAGTTCCATTCAAGTTCAATGCTATAGCACAGAAGTGGGAAACCATTAAAATTGAGGATCTCAAGATTGATAGAAATGAGGTGCT TGTCGTGAATTCTGGGTATAGATTAAGAAACTTGCTTGATGAGACTGTGGTGGTGGAGAGTCCTAGAAATATCGTTCTCAATTTGATCAGGAATATGAAT CCTGATGTTTTCATACAAGGGGTAGTTAATGGAGCCTACAATGCTCCATTCTTTATCACACGCTTCCGAGAGGCCCTGTTCCACTTCTCCACTTTGTTTG ATGTTCTGGAGGCTAATGTGTCTCGTGAGGTTCCAGAGAGGATGCTTATTGAGAGAGAGATTTTTGGGTGGGAGGCAATGAATGTAATTGCATGCGAGGG TGCAGAGAGGATAGAGAGGCCAGAGACATACAAGCAGTGGCAGATGCGGGTCCTAAGGGCTGGGTTTAGGCAGCTCCCTTTGAATCGGGAGATTTTTACG ACAGCGAAGGAGAGGGTGGAAGCTCTCTACCACAAGGATTTTGTAATTGATGAAGATAGCCAGTGGTTGCTCCAAGGGTGGAAGGGCCGGATTGTTTATG CACTCTCTTCTTGGAAGCCTGATTGTTAA
AA sequence Show only first row Show all	>Potri.008G057400.4 pacid=42808595 polypeptide=Potri.008G057400.4.p locus=Potri.008G057400 ID=Potri.008G057400.4.v4.1 annot-version=v4.1 MIMDQSLRGLYGSVNGLKLSNETQSASSVQDLVNAFKLDNNCVNQNYVNSTRVPPDSTLSNSVLSASMSQEGDSHEDFDFSDVVLKYISKMLMEEEMEEK TCMFQESSAALLAAEKSLYELIGEKHPSAPDDPVQFLDQNHERPDENHDLNCSNCTSSTSSSSGSSLLDHGSTCDLGEYKSSRHASQSSYSPGNSSVTVD GFVDSPVGPNMVAEIFGESESVMQFKKGFEEASKFIPNGNLLIDLESKGLFLKDLKEDVKDVLATAGEKRENDNYADGSRGKKNPHPEESALEGGRSNKQ SAVYSESTASPADFDMVLLNCGKDDSALQAALHNGESKSVQQNGQARGSSGGKARGKRQGGKRDVVDLRTLLTLCAQAVAADDRRSANDLLKQIRQNAPS TGDAMQRLANIFADGLEARLAGSGTQIYRALISKPTSAADVLKAYHMFLAACPFRKLSNFFSNKTIMNIAENASRVHIVDFGIMYGFQWPCLIQRLSSRP GGPPHLRITGIDLPNPGFRPAERVEETGRRLANYANTFKVPFKFNAIAQKWETIKIEDLKIDRNEVLVVNSGYRLRNLLDETVVVESPRNIVLNLIRNMN PDVFIQGVVNGAYNAPFFITRFREALFHFSTLFDVLEANVSREVPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQMRVLRAGFRQLPLNREIFT TAKERVEALYHKDFVIDEDSQWLLQGWKGRIVYALSSWKPDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	0	1
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	2.00	0.8942
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	5.19	0.8829
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	7.34	0.8850
AT4G02715			unknown protein		Potri.005G211400 [exp]	8.00	0.8611
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	9.48	0.8662
AT4G12290			Copper amine oxidase family pr...		Potri.001G118300 [exp]	10.48	0.8537
AT1G70570			anthranilate phosphoribosyltra...		Potri.010G044900 [exp]	11.31	0.8233
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.002G172800 [exp]	11.48	0.8647
AT1G65540			LETM1-like protein (.1)		Potri.010G178400 [exp]	16.30	0.8356
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Potri.005G149800 [exp]	16.30	0.7758

Compare expression of checked genes

Potri.008G057400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.