Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RCA.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39730 802 / 0 RCA rubisco activase (.1.2.3) AT1G73110 338 / 4e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200500 [exp] 929 / 0 AT2G39730 797 / 0.0 rubisco activase (.1.2.3) Potri.016G101100 [exp] 742 / 0 AT2G39730 696 / 0.0 rubisco activase (.1.2.3) Potri.001G037300 [exp] 347 / 1e-115 AT1G73110 663 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G187601 [exp] 42 / 0.0001 AT1G73110 78 / 3e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000518 [exp] 819 / 0 AT2G39730 790 / 0.0 rubisco activase (.1.2.3) Lus10002710 [exp] 810 / 0 AT2G39730 787 / 0.0 rubisco activase (.1.2.3) Lus10003234 [exp] 783 / 0 AT2G39730 757 / 0.0 rubisco activase (.1.2.3) Lus10040275 [exp] 741 / 0 AT2G39730 730 / 0.0 rubisco activase (.1.2.3) Lus10004708 [exp] 740 / 0 AT2G39730 733 / 0.0 rubisco activase (.1.2.3) Lus10010868 [exp] 664 / 0 AT2G39730 642 / 0.0 rubisco activase (.1.2.3) Lus10035616 [exp] 383 / 6e-132 AT2G39730 362 / 5e-124 rubisco activase (.1.2.3) Lus10041627 [exp] 346 / 3e-115 AT1G73110 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Potri.008G058500.1 pacid=42807072 polypeptide=Potri.008G058500.1.p locus=Potri.008G058500 ID=Potri.008G058500.1.v4.1 annot-version=v4.1 ATGGCAGCCACCATCTCCACCGTTGGAGCTGTCAACAGAGCACCGCTGGCCTTGAATGGCTCTGGCGCTGGATCCACAGTCCCAACTTCAGCTTTCTTTG GCAACAGCTTGAAGAAAGTGAGCTCATCAAGGTTCACAAACTCCAAGATTTCATCAGGGAGCTTCAAGGTTGTTGCTGAGGAGTACGATGAGGAGAAGCA GACCGAAAAGGACAGATGGGGAGGCCTTGTTACAGACATGTCTGATGATCAACAAGATATCACCAGAGGAAAGGGTATGGTGGACTCTCTTTTCCAAGCC CCCCAGGGAACTGGAACTCACAACCCCGTTTTGAGTTCTTATGAGTACCTCAGTCAAGGTCTTCGTACGTACAACCTGGACAACATGATGGATGGTTTCT ACATTGCTCCTGCTTTCATGGACAAGATTGTTGTTCACATCTCCAAGAACTTCATGAGCCTGCCTAATATCAAGGTTCCTCTCATCTTGGGTATTTGGGG AGGCAAAGGTCAAGGAAAATCCTTCCAGTGTGAACTGGTCTTTGCCAAGATGGGAATTAGCCCAATCATGATGAGTGCCGGAGAATTGGAAAGTGGAAAC GCTGGTGAACCCGCAAAACTTATCAGGCAAAGGTACCGTGAGGCGGCTGATATAATCAAGAAGAAGGGAAAGATGTGCTGCCTCTTCATCAATGATCTTG ATGCCGGAGCTGGGAGGCTTGGTGGAACTACCCAATACACTGTCAACAACCAGATGGTTAATGCTACCCTCATGAACATTGCTGACAACCCAACAAATGT GCAACTTCCCGGCATGTACAACAAGGAGGATAATCCACGTGTACCCATCATCGTCACTGGTAACGATTTTTCAACATTGTATGCTCCTCTTATCCGTGAT GGTCGTATGGAGAAATTCTACTGGGCTCCTACCAGAGAAGATAGGATTGGTGTCTGCATTGGAATTTTCAAGACTGACAATGTTCCCGAGGATGATATTG TCAAGCTTGTTGATACCTTCCCTGGCCAATCTATTGATTTCTTTGGTGCTCTCAGGGCCCGAGTATATGACGATGAGGTGAGGAAGTGGGTCTCAGGTGT TGGTGTTGAGAGCATTGGAAAGAAGCTTGTGAACTCAAGGGAAGGACCCCCAACTTTTGAGCAGCCACCGATGACAGTCGAGAAGCTCTTTGAGTACGGA AACATGCTTGTCAAGGAGCAAGAGAATGTGAAGAGAGTCCAATTGGCTGACAAGTACCTGAGCGACGCTGCTCTTGGTGAAGCCAATCAAGATGCCATTG AGAGAGGAACTTTCTATGGCCAAGCGGCACAGCAAGTAAAGGTGCCTATCCCTGAAGGCTGTACCGACCCAAATGCAGCAAACTTTGATCCAACAGCTAG GAGTGATGATGGAAGCTGCTCTTACTGA
AA sequence Show only first row Show all	>Potri.008G058500.1 pacid=42807072 polypeptide=Potri.008G058500.1.p locus=Potri.008G058500 ID=Potri.008G058500.1.v4.1 annot-version=v4.1 MAATISTVGAVNRAPLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVAEEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQA PQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGN AGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRD GRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYG NMLVKEQENVKRVQLADKYLSDAALGEANQDAIERGTFYGQAAQQVKVPIPEGCTDPNAANFDPTARSDDGSCSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39730		RCA	rubisco activase (.1.2.3)		Potri.008G058500 [exp]	0	1	RCA.2
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.008G187400 [exp]	1.41	0.9803	Pt-AOAT1.2
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.011G142200 [exp]	4.47	0.9788
AT1G11860			Glycine cleavage T-protein fam...		Potri.011G006800 [exp]	5.29	0.9681	gdcT1,Pt-GDCST.1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.015G104500 [exp]	5.91	0.9740
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Potri.004G175800 [exp]	7.14	0.9754	Pt-HPR.1
AT2G26500			cytochrome b6f complex subunit...		Potri.004G147300 [exp]	7.34	0.9747
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.019G117900 [exp]	8.77	0.9715
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	8.94	0.9733
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.014G140500 [exp]	9.16	0.9748
AT1G49975			unknown protein		Potri.001G292000 [exp]	9.48	0.9747

Compare expression of checked genes

Potri.008G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.