Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55730 291 / 3e-95 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 247 / 2e-78 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 217 / 8e-67 MYB ATMYB25 myb domain protein 25 (.1) AT4G37260 163 / 6e-47 MYB ATMYB73 myb domain protein 73 (.1) AT2G23290 162 / 1e-46 MYB ATMYB70 myb domain protein 70 (.1) AT5G67300 161 / 2e-46 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G50060 158 / 5e-45 MYB ATMYB77 myb domain protein 77 (.1) AT1G17950 142 / 2e-39 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G26780 139 / 3e-38 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT1G69560 140 / 5e-38 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195000 [exp] 682 / 0 AT3G55730 295 / 7e-97 myb domain protein 109 (.1) Potri.009G096000 [exp] 181 / 1e-54 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.001G300200 [exp] 176 / 8e-53 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.007G048900 [exp] 169 / 5e-49 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.002G122600 [exp] 166 / 6e-48 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 165 / 1e-47 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.008G070900 [exp] 163 / 1e-47 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.014G035100 [exp] 160 / 1e-46 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.005G142600 [exp] 163 / 2e-46 AT4G37260 246 / 7e-80 myb domain protein 73 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028250 [exp] 340 / 4e-114 AT3G55730 306 / 2e-101 myb domain protein 109 (.1) Lus10040239 [exp] 331 / 7e-111 AT3G55730 315 / 1e-104 myb domain protein 109 (.1) Lus10014103 [exp] 170 / 2e-50 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10010238 [exp] 169 / 5e-49 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 167 / 2e-48 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10040940 [exp] 164 / 2e-48 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10007503 [exp] 162 / 3e-47 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10032764 [exp] 162 / 4e-47 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10021762 [exp] 162 / 8e-47 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10010260 [exp] 162 / 2e-46 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G062700.1 pacid=42806259 polypeptide=Potri.008G062700.1.p locus=Potri.008G062700 ID=Potri.008G062700.1.v4.1 annot-version=v4.1 ATGCAAAATCAAACTGAAAACAACAATGACGCAATGAGAATAACAGAAGGGGACAGAGAGAATCAGACGAATTCGCCGACTGGCGGAGATGGTGGAGCTG AGTCAGGTGAGCTTGGTGGCGGAATCGGTGGAAACGGTCGGACTAATGGTAAAGTGAAAGGACCGTGGTCACCAGAGGAAGATGCAGTACTGAGTCAACT AGTGAGTAAGTTTGGAGCGAGGAATTGGAGTTTGATAGCACGAGGAATACCAGGGAGGTCTGGGAAATCTTGTAGGCTTAGATGGTGTAATCAGCTTGAT CCTTGCCTCACGCGCAAACCTTTCACTGAGGAAGAAGATCGCATTATAATTGCAGCTCATGCAAAGCATGGAAACAAATGGGCAGCAATCGCGAGGCTCT TGCCAGGTAGAACTGATAATTCAATCAAGAACCATTGGAATTCTACTCTGAGGCGCCGATGGGCAGATCTGATAAGGTTGAAACCAGGAACCAGTGATGT GATGGAAGATGGTAGCATTGAAATAACAAGGGCATCATCAGAAGAAACCCTTTCAGTTTGTGACATCAGTTCATCACAGCCCCCAGAAGTGAGAGATGTC ACAATCGATGACCAACCCAGCCAGCATGAAGACAAAGCTCAAACAGACACCATTCCTCAAACAAATGAGGTCACTGTTGCAACAGAACCACATGGAAATC CCACCCTTCCTCGTCCTGAGGCACGTGTTAGTGCATTTAAAGTTTATAATCCCCCCAGTGGTCTGAAAATGAGTTCTGGGCTTACAAGAACACTTCCAAC TCATGGCCCTTCGGTTCAAACGCCCAAACCAGACTTGGGGTCTTGCAAATTCCTTGAAGATGTTCATTGTGAGCCCATAATTCCTTCACGATGTGGGTAT GGTTGCTGTGCGACCCCGAGCGGGGGTCATCCTCCAAGCTCTTTGCTGGGGCCTGAGTTTGTTGAATATGAGGAGCCCCCTCCTTTCTCAAGTCAGGAAT TGATCTCAATTGCTACAGATTTGAACAATATTGCATGGATGAAGAGTGGCCTGGAGAACAGCAGCACTGGGATACCTAGCAATGCTGCAAGCTACAGAAT GTCTCAAGGGACTCCTGTTGACTCCCAAATGGGAATGTCTGAACAGAATTTAAGAAACGGCCATATGCATTTTGAGGAGGGGCGAAGCAGATTAATGGGC ACAATGGCAGGTACTATATCAACCCAGATGCCTGCTTAA
AA sequence Show only first row Show all	>Potri.008G062700.1 pacid=42806259 polypeptide=Potri.008G062700.1.p locus=Potri.008G062700 ID=Potri.008G062700.1.v4.1 annot-version=v4.1 MQNQTENNNDAMRITEGDRENQTNSPTGGDGGAESGELGGGIGGNGRTNGKVKGPWSPEEDAVLSQLVSKFGARNWSLIARGIPGRSGKSCRLRWCNQLD PCLTRKPFTEEEDRIIIAAHAKHGNKWAAIARLLPGRTDNSIKNHWNSTLRRRWADLIRLKPGTSDVMEDGSIEITRASSEETLSVCDISSSQPPEVRDV TIDDQPSQHEDKAQTDTIPQTNEVTVATEPHGNPTLPRPEARVSAFKVYNPPSGLKMSSGLTRTLPTHGPSVQTPKPDLGSCKFLEDVHCEPIIPSRCGY GCCATPSGGHPPSSLLGPEFVEYEEPPPFSSQELISIATDLNNIAWMKSGLENSSTGIPSNAASYRMSQGTPVDSQMGMSEQNLRNGHMHFEEGRSRLMG TMAGTISTQMPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.008G062700 [exp]	0	1
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.002G115000 [exp]	3.46	0.8755
AT1G12830			unknown protein		Potri.001G323000 [exp]	8.24	0.8558
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.003G120201 [exp]	9.64	0.8604
AT5G40190			RNA ligase/cyclic nucleotide p...		Potri.017G073800 [exp]	9.79	0.8334
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.004G055400 [exp]	10.95	0.8532
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	13.41	0.8547
AT2G01410			NHL domain-containing protein ...		Potri.001G156300 [exp]	13.78	0.8610
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.001G062800 [exp]	18.49	0.8401
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G002100 [exp]	22.00	0.8456
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	23.23	0.8380	Pt-ATTIM23.1

Compare expression of checked genes

Potri.008G062700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.