Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrProT1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39890 687 / 0 ATPROT1, ProT1 proline transporter 1 (.1.2) AT3G55740 684 / 0 ATPROT2, ProT2 proline transporter 2 (.1.2) AT2G36590 650 / 0 ATPROT3, ProT3 proline transporter 3 (.1) AT1G08230 150 / 1e-40 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 134 / 2e-34 Transmembrane amino acid transporter family protein (.1) AT5G40780 114 / 2e-27 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 114 / 2e-27 Transmembrane amino acid transporter family protein (.1) AT1G24400 112 / 7e-27 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 107 / 5e-25 Transmembrane amino acid transporter family protein (.1) AT1G71680 98 / 5e-22 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194600 [exp] 796 / 0 AT2G39890 702 / 0.0 proline transporter 1 (.1.2) Potri.005G219300 [exp] 171 / 3e-48 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 166 / 2e-46 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 157 / 4e-43 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.003G138100 [exp] 154 / 6e-42 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G149900 [exp] 153 / 1e-41 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 148 / 1e-39 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G055800 [exp] 116 / 2e-28 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 113 / 2e-27 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009877 [exp] 712 / 0 AT2G39890 700 / 0.0 proline transporter 1 (.1.2) Lus10028251 [exp] 672 / 0 AT3G55740 676 / 0.0 proline transporter 2 (.1.2) Lus10040238 [exp] 670 / 0 AT3G55740 673 / 0.0 proline transporter 2 (.1.2) Lus10038639 [exp] 155 / 4e-42 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 132 / 9e-34 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 125 / 2e-31 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10014605 [exp] 108 / 2e-25 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 107 / 4e-25 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 107 / 5e-25 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10037913 [exp] 104 / 3e-24 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.008G062900.1 pacid=42806694 polypeptide=Potri.008G062900.1.p locus=Potri.008G062900 ID=Potri.008G062900.1.v4.1 annot-version=v4.1 ATGGAAGTGAATAATGGAGATGGAGTTGGGAATTCTAACATGTCTCGAAAAGTTATTGACGAGGAAAAGTCAACAGTTGTGATTCCTGAGACTGCCCATC AGATTAGCAGTGATTCATGGTTTCAAGTTGGTTTTGTACTCACCACCGGTATCAACAGTGCCTATGTTTTGGGATATTCTGGTACCATTATGGTTCCCCT GGGTTGGATACCTGGAGTAATAGGTTTGATTATAGCCACTGCAATATCACTGTATGCAAATTCTCTTGTTGCCAAGCTCCATGAATTTGGTGGGAGGAGA CATATCAGATACAGGGATCTCGCAGGCTTTATCTATGGCAGGAAAGCTTATTCTATTACCTGGGCATTGCAGTATGTTAATCTTTTTATGATTAACACTG GATACATCATTTTGGCTGGATCAGCCTTAAAGGCCTTCTATGTTCTTTTTAGCGATGACCAGGTCATGAAACTCCCATACTTCATTGCTATTTCTGGGTT TGTATGTGCCTTGTTTGGCATATCAATTCCCCACTTGTCAGCTCTCAGACTTTGGCTGGGAGTTTCCACGGTTCTCAGCCTGATATATATAGTTGTGGCA TTCGTGCTCTCTGTTAAAGATGGAATTGAAGCACCATCTAGGGATTACAACATTCCAGGAACAACAACAAGCAAAATCTTTACAACAATTGGGGCATCTG CTAATCTGGTTTTTGCATTTAATACAGGGATGCTTCCAGAAATACAGGCAACCATAAAAGAGCCCGTTGTCAGTAACATGATGAAAGCACTTTACTTCCA ATTCACGGCTGGAGTTTTACCAATGTATGCAGTGACATTCATTGGATATTGGGCTTATGGAAGTTCAACATCAACCTATTTGCTTAGCAGCGTCAATGGT CCGGTTTGGGTGAAGGGATTGGCCAACATATCTGCATTCCTGCAAACAGTCATTGCTTTGCATATATTCGCAAGCCCAATGTATGAGTATTTGGATACGA AGTTTGGGGTTAAAGGAAGTCCACTTGCAATTCGCAACTTGTCGTTTAGGATCGGTGTAAGAGGTGGCTACCTAACTATTAACACACTGGTGGCTGCTCT TCTGCCCTTCCTTGGAGATTTTATGAGCCTTACTGGCGCCATCAGCACCTTTCCACTGACATTTATTCTTGCCAACCACATGTACCTAAAAGCAAAGCAT AACAAATTGACTTCTCTACAAAAGCTTTGGCATTGGCTCAATGTTTGTTTCTTCGGCCTCATGTCAATTGCAGCATTAGTTTCAGCTCTGAGGCTTATTG CTGTAGATTCCAAAACATACAGTGTATTTGCAGATATATAG
AA sequence Show only first row Show all	>Potri.008G062900.1 pacid=42806694 polypeptide=Potri.008G062900.1.p locus=Potri.008G062900 ID=Potri.008G062900.1.v4.1 annot-version=v4.1 MEVNNGDGVGNSNMSRKVIDEEKSTVVIPETAHQISSDSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIPGVIGLIIATAISLYANSLVAKLHEFGGRR HIRYRDLAGFIYGRKAYSITWALQYVNLFMINTGYIILAGSALKAFYVLFSDDQVMKLPYFIAISGFVCALFGISIPHLSALRLWLGVSTVLSLIYIVVA FVLSVKDGIEAPSRDYNIPGTTTSKIFTTIGASANLVFAFNTGMLPEIQATIKEPVVSNMMKALYFQFTAGVLPMYAVTFIGYWAYGSSTSTYLLSSVNG PVWVKGLANISAFLQTVIALHIFASPMYEYLDTKFGVKGSPLAIRNLSFRIGVRGGYLTINTLVAALLPFLGDFMSLTGAISTFPLTFILANHMYLKAKH NKLTSLQKLWHWLNVCFFGLMSIAALVSALRLIAVDSKTYSVFADI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Potri.008G062900 [exp]	0	1	PtrProT1
AT4G37240			unknown protein		Potri.004G149600 [exp]	4.24	0.7946
					Potri.001G107400 [exp]	14.49	0.7674
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.015G055000 [exp]	17.14	0.7895
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G099800 [exp]	23.23	0.7540
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G020800 [exp]	26.66	0.7680
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	27.12	0.7704	DAO.3
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	34.27	0.7776
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143820 [exp]	40.98	0.7757
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101401 [exp]	43.26	0.7327
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G099400 [exp]	44.15	0.7625

Compare expression of checked genes

Potri.008G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.