Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11320 566 / 0 Nucleotide-sugar transporter family protein (.1) AT5G05820 560 / 0 Nucleotide-sugar transporter family protein (.1) AT5G04160 450 / 7e-161 Nucleotide-sugar transporter family protein (.1) AT3G10290 449 / 1e-159 Nucleotide-sugar transporter family protein (.1) AT1G12500 383 / 1e-133 Nucleotide-sugar transporter family protein (.1) AT1G21870 179 / 4e-54 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 177 / 3e-53 EamA-like transporter family protein (.1) AT5G25400 120 / 3e-31 Nucleotide-sugar transporter family protein (.1) AT5G11230 119 / 7e-31 Nucleotide-sugar transporter family protein (.1) AT4G32390 115 / 2e-29 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194100 [exp] 594 / 0 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 506 / 0 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 485 / 1e-174 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 454 / 3e-162 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 434 / 2e-154 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 406 / 1e-142 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 395 / 2e-138 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 177 / 3e-53 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 176 / 1e-52 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009878 [exp] 548 / 0 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 530 / 0 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 526 / 0 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 523 / 0 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 504 / 0 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 441 / 5e-157 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 441 / 8e-157 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 333 / 3e-115 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 319 / 9e-109 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 178 / 1e-53 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.008G063400.1 pacid=42808858 polypeptide=Potri.008G063400.1.p locus=Potri.008G063400 ID=Potri.008G063400.1.v4.1 annot-version=v4.1 ATGAAGAGCACATCACGATTTTTCACGATCAGTCTAGTGGCATCATGGTACTGCTCAAACATAGGAGTTCTGTTGCTTAACAAATACCTGTTAAGCAATT ACGGGTTCAAGTACCCGATCTTCTTGACCATGTGTCACATGACAGCTTGTAGTTTGTTAAGTTACGTCGCAATTGCGTGGATGAAGATGGTACCTATGCA GACGATTCGGTCTAAAACACAATTCTTGAAGATCTCGGCTTTAAGTTTAGTGTTTTGTGTGTCGGTTGTGTTTGGTAATATTTCTTTGAGGTTCTTGCCT GTCTCTTTTAATCAGGCTGTTGGTGCTACTACGCCGTTTTTTACGGCTGTTTTCGCTTATTTGATGATTCTTAAGAGAGAGGCTTGGCTTACCTACGCTA CCTTGGTTCCTGTTGTTACTGGGGTTGTTATTGCTAGTGGGGGTGAACCAAGTTTTCATCTATTTGGGTTTATAATGTGTATTTCTGCTACGGCTGCAAG GGCACTCAAATCAGTGCTGCAAGGGATTTTACTTTCTTCTGAAGGGGAGAAGCTGAATTCTATGAACCTCCTCCTATACATGGCTCCGATAGCTGTTGTA ATTTTACTCCCAGTAACACTTGTCATGGAAGAAAATGTGGTAGGTATCACAGTGGCTCTCGCCAGAGATGACAGTAAGATCATCTGGTACTTGCTATTCA ATTCAGCACTTGCATATTTTGTGAACCTGACCAACTTCTTGGTTACAAAACACACCAGTGCTCTTACTCTCCAGGTTCTTGGTAATGCAAAAGGGGCCGT GGCTGTTGTGGTCTCAATTTTAATATTCAGAAATCCTGTGTCTGTTACCGGGATGCTTGGTTACTCGCTTACAGTCTTTGGAGTAATCCTCTACAGCGAA GCCAAGAAACGAAGCAAATGA
AA sequence Show only first row Show all	>Potri.008G063400.1 pacid=42808858 polypeptide=Potri.008G063400.1.p locus=Potri.008G063400 ID=Potri.008G063400.1.v4.1 annot-version=v4.1 MKSTSRFFTISLVASWYCSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLLSYVAIAWMKMVPMQTIRSKTQFLKISALSLVFCVSVVFGNISLRFLP VSFNQAVGATTPFFTAVFAYLMILKREAWLTYATLVPVVTGVVIASGGEPSFHLFGFIMCISATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPIAVV ILLPVTLVMEENVVGITVALARDDSKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVFGVILYSE AKKRSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11320			Nucleotide-sugar transporter f...		Potri.008G063400 [exp]	0	1
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.002G248400 [exp]	2.00	0.7422	ATCSLC06.4
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.001G162700 [exp]	5.00	0.7647
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	6.32	0.7349	DREB65
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	10.77	0.7381
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Potri.010G242300 [exp]	14.45	0.6882
AT5G38700			unknown protein		Potri.014G123400 [exp]	15.58	0.7206
AT1G72790			hydroxyproline-rich glycoprote...		Potri.001G198900 [exp]	17.23	0.7028
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	18.70	0.6944
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G035100 [exp]	18.89	0.7271
AT1G45688			unknown protein		Potri.002G124600 [exp]	19.59	0.7328

Compare expression of checked genes

Potri.008G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.