Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LAC90b
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05390 893 / 0 LAC12 laccase 12 (.1) AT2G40370 881 / 0 LAC5 laccase 5 (.1) AT5G07130 749 / 0 LAC13 laccase 13 (.1) AT2G30210 747 / 0 LAC3 laccase 3 (.1) AT2G38080 568 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G09360 563 / 0 LAC14 laccase 14 (.1) AT2G29130 559 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G03260 558 / 0 LAC11 laccase 11 (.1) AT5G01190 549 / 0 LAC10 laccase 10 (.1) AT5G60020 545 / 0 LAC17, ATLAC17 laccase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183500 [exp] 1057 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073700 [exp] 950 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183600 [exp] 943 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.013G152700 [exp] 776 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 756 / 0 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.001G206200 [exp] 597 / 0 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.006G094100 [exp] 597 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.004G156400 [exp] 586 / 0 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.016G112000 [exp] 585 / 0 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017427 [exp] 854 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10009841 [exp] 827 / 0 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10040957 [exp] 811 / 0 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10007532 [exp] 807 / 0 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10017426 [exp] 804 / 0 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10007531 [exp] 761 / 0 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10035546 [exp] 611 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10027747 [exp] 609 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10042249 [exp] 596 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10017175 [exp] 587 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.008G073800.1 pacid=42806868 polypeptide=Potri.008G073800.1.p locus=Potri.008G073800 ID=Potri.008G073800.1.v4.1 annot-version=v4.1 ATGGAGGGTTTCGACAACATCTTTGCCATCAATCATCGTCTCTCTTTGTTCTTCTTGGGCCTTTTGTTACTCTTAGCTTCTGCATTGTCCTTGGCAAACG CCGAAACGCACAACCATGATTTTGTTATTCAAGCAACTCCAGTGAAGAGGCTGTGCAAGACCCAGAATTCCATCACGGTTAATGGGATGTTTCCGGGACC AACACTGGAAGTGAATAATGGAGACACTCTAGTAGTCAATGTTGTCAACAAAGCCCAATACAATGTCACCATTCATTGGCATGGCGTTAGGCAAATGAGA ACGGGATGGGCAGATGGACCAGAATTTGTGACGCAATGCCCAATTAGACCAGGTGGGAGTTACACCTACAAATTTACCATTCAAGGGCAAGAGGGGACCC TGTGGTGGCATGCTCATAGCTCATGGCTTAGAGCCACTGTTTATGGTGCTCTAATTGTCCATCCGAAAGAAGGATCTCCGTACCCGTTCTCCAAGCAGCC CAAGCGCGAAACAGCAATTCTTCTCGGTGAATGGTGGAACGCGAATCCAATTGATGTCGTGCGAGAAGCAACTCGAACGGGAGGAGCACCAAATGTTTCC GATGCCTATACCGTCAATGGTCAACCTGGTGATCTTTACAACTGCTCTAGCCAAGATACTGTAATTGTGCCAATAGACTCTGGCGAGACTAATCTTCTCC GAGTGGTCAATTCTGCACTCAATCAGCCCCTTTTCTTCACTGTTGCCAACCACAAGTTCACTGTCGTTGGTGCGGATGCATCCTATGTCAAACCGTTCAC CACATCAGTCCTGATGCTTGGACCTGGCCAAACCACTGATGTTTTGATTTCCGGTGACCAGACACCTTCACGGTATTACATGGCAGCACGTGCCTATCAA AGCGCGCAAAATGCACCATTCGACAATACTACCACTACCGCTATTCTTGAATACAAATCTTCCGCCTGTGCTGCCAAGAATTGTTCATCAAACAAACCAA TCATGCCACCGTTGCCGGCCTACAATGACACAGCCACTGTCACTACTTTCACTACTAGCTTCAAAAGTGCTGATAAAACCTTAGTCCCAACTGACATTGA TGAGAGTTTATTCTTCACAATTGGTTTAGGTCTCAATCCTTGCCCATCTAATTTTAACAAGTCTAGCCAGTGTCAAGGGCCTAACGGAACCCGCTTCACT GCAAGCATGAACAACGTATCTTTTGTGCTCCCATCCAACTTCTCTCTGTTGCAAGCTCATCACCAACGCATACAAGGAGTTTTCACCACTGATTTTCCAG CAAATCCACCACGAAAATTTGATTACACTGGTAATGTTAGCCGGTCCCTCTTCCAGCCTGTTGCTGGGACTAAGCTGTACAATTTGAAATATGGTTCAAG GGTTCAGATTGTATTGCAAGACACGAGCATTGTCACACCAGAAAACCACCCAATCCATCTTCATGGATATGACTTCTACATTATCGCACAAGGATTTGGG AATTATAATCCCCGAACAGATCCATCAAAATTTAACCTTGTTGATCCACCTCTCAGAAACACAGTTGCAGTCCCTGTAAACGGATGGGCGGTCATTCGAT TCGTCGCAGACAATCCAGGTGTATGGCTAATGCATTGCCACCTGGATGTCCACATCACCTGGGGTCTTGCCACAGCTTTCTTGGTAGAGAATGGAGTTGG ACAATTGCAATCCATTGAGTCGCCTCCAGAAGATCTGCCTCTATGCTGA
AA sequence Show only first row Show all	>Potri.008G073800.1 pacid=42806868 polypeptide=Potri.008G073800.1.p locus=Potri.008G073800 ID=Potri.008G073800.1.v4.1 annot-version=v4.1 MEGFDNIFAINHRLSLFFLGLLLLLASALSLANAETHNHDFVIQATPVKRLCKTQNSITVNGMFPGPTLEVNNGDTLVVNVVNKAQYNVTIHWHGVRQMR TGWADGPEFVTQCPIRPGGSYTYKFTIQGQEGTLWWHAHSSWLRATVYGALIVHPKEGSPYPFSKQPKRETAILLGEWWNANPIDVVREATRTGGAPNVS DAYTVNGQPGDLYNCSSQDTVIVPIDSGETNLLRVVNSALNQPLFFTVANHKFTVVGADASYVKPFTTSVLMLGPGQTTDVLISGDQTPSRYYMAARAYQ SAQNAPFDNTTTTAILEYKSSACAAKNCSSNKPIMPPLPAYNDTATVTTFTTSFKSADKTLVPTDIDESLFFTIGLGLNPCPSNFNKSSQCQGPNGTRFT ASMNNVSFVLPSNFSLLQAHHQRIQGVFTTDFPANPPRKFDYTGNVSRSLFQPVAGTKLYNLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIIAQGFG NYNPRTDPSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLATAFLVENGVGQLQSIESPPEDLPLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05390		LAC12	laccase 12 (.1)		Potri.008G073800 [exp]	0	1	LAC90b
AT5G05390		LAC12	laccase 12 (.1)		Potri.010G183500 [exp]	1.41	0.8155
AT2G24370			Protein kinase protein with ad...		Potri.011G008356 [exp]	4.00	0.7898
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G034500 [exp]	5.47	0.7634
AT2G30720			Thioesterase/thiol ester dehyd...		Potri.017G009800 [exp]	6.70	0.6806
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	8.77	0.7618
AT3G07470			Protein of unknown function, D...		Potri.002G238900 [exp]	9.27	0.6815
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.005G108900 [exp]	11.61	0.7583
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.015G143950 [exp]	12.40	0.7332
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Potri.002G191000 [exp]	14.31	0.6837
AT3G23200			Uncharacterised protein family...		Potri.010G073000 [exp]	14.96	0.7260

Compare expression of checked genes

Potri.008G073800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.