Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15310 291 / 1e-96 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 290 / 2e-95 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G61250 230 / 3e-73 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G02940 224 / 1e-70 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 222 / 2e-69 MYB ATMYB93 myb domain protein 93 (.1) AT4G21440 221 / 3e-69 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 217 / 1e-67 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G05100 216 / 2e-67 MYB ATMYB74 myb domain protein 74 (.1) AT5G54230 211 / 8e-66 MYB ATMYB49 myb domain protein 49 (.1) AT5G65230 210 / 3e-65 MYB ATMYB53 myb domain protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G089200 [exp] 645 / 0 AT3G01140 289 / 4e-95 NOECK, myb domain protein 106 (.1) Potri.010G165700 [exp] 551 / 0 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.017G086300 [exp] 322 / 6e-108 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.002G157600 [exp] 228 / 3e-72 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.014G081200 [exp] 225 / 4e-71 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.001G408700 [exp] 225 / 9e-71 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 224 / 2e-70 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.007G093900 [exp] 222 / 2e-69 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 221 / 4e-69 AT1G34670 309 / 7e-104 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026620 [exp] 301 / 5e-101 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10033003 [exp] 286 / 7e-94 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10015712 [exp] 259 / 4e-84 AT3G01140 269 / 5e-88 NOECK, myb domain protein 106 (.1) Lus10019086 [exp] 253 / 1e-81 AT3G01140 272 / 1e-89 NOECK, myb domain protein 106 (.1) Lus10015376 [exp] 233 / 2e-73 AT5G15310 266 / 9e-88 myb domain protein 16 (.1.2) Lus10014784 [exp] 219 / 4e-69 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 219 / 6e-69 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10018418 [exp] 215 / 8e-67 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 214 / 1e-66 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 216 / 4e-66 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G089700.1 pacid=42807638 polypeptide=Potri.008G089700.1.p locus=Potri.008G089700 ID=Potri.008G089700.1.v4.1 annot-version=v4.1 ATGGTCAAGTCTCAATGCTTTGAGAAGGTGGGACTGAAGAAAGGGCCATGGACTCCTGAAGAAGACCAGAAGCTTTTGGCTTACATCGAAGAGCATGGGC ATGGAAGCTGGCGAGCCTTGCCTGCCAAAGCTGGACTTCGAAGATGCGGGAAGAGCTGTAGACTCAGGTGGACCAACTACCTTCGGCCAGATATCAAGAG AGGAAAGTTTAATTTGCAGGAAGAACAATCAATCATTCAGCTTCATGCTCTTCTTGGAAACAGGTGGTCAGCCATTGCTACTCACTTGCCGAAAAGAACC GATAACGAGATCAAGAATTACTGGAACACACATCTTAAGAAAAGATTAGACAAAATGGGCATTGATCCTGTGACACACAAGCCAAAAGCTGATTCTTTCG GCTCAGGAAGTGGCCATTCCAAGGGTGCTGCCAGTTTAAGCCACATGGCTCAATGGGAGAGTGCTCGACTAGAGGCCGAAGCCAGATTGGTCCGTGAGTC GAAGTTAACTGTACCTAATCCTCCCAAAAACATACTAGGCTCTGCAGTTTCAGCTCAAGTCTCCAACAAAAGTAGTGCAACTCCAACAGAAAGACCACGG TGTCTTGATGTACTCAAAGCATGGCAAGGGGTCGTCTTCAGCATGTTCTCGGTAGGCAGCAGTGACTCTCTCGAGTCTCCAACATCCACATTGAATTTCT CAGAAAATGCATTAGCCATCCCACTCATTGGAGTTCAGAAAAATCCAACCACCACACTAGCTTTTGCCACAAATAATGCTACATGCAACAGAGGGACTAC GGTCAGTGAATTTGATAGGGGAAACCAGTTGGAGTGCTTTGAGAAACTGAAAGATCCAGCACAAGTGAGACGAAATTTGGACAGTTCAATGGCAATTCAT GGTATAAGCCCGTATGCCGGCGATCATAATGCGTGGTTTGTTGACTCTTCAGCGAATGAAAACGCACCTATGGGGAATATCATTGATGGATTTTCGGAAA TTTTAGTGTGTAATTCTCTGGACCCCAACCCGACCTGTTCTGGAGAGAATATTAATGATAACTATGCTGGTAATCTTGAAGATAATTATTGGAATAGCTT ACTCAATCTGGTGGATGCTTCTCCAACTGGATCATCTGTATTTTGA
AA sequence Show only first row Show all	>Potri.008G089700.1 pacid=42807638 polypeptide=Potri.008G089700.1.p locus=Potri.008G089700 ID=Potri.008G089700.1.v4.1 annot-version=v4.1 MVKSQCFEKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFNLQEEQSIIQLHALLGNRWSAIATHLPKRT DNEIKNYWNTHLKKRLDKMGIDPVTHKPKADSFGSGSGHSKGAASLSHMAQWESARLEAEARLVRESKLTVPNPPKNILGSAVSAQVSNKSSATPTERPR CLDVLKAWQGVVFSMFSVGSSDSLESPTSTLNFSENALAIPLIGVQKNPTTTLAFATNNATCNRGTTVSEFDRGNQLECFEKLKDPAQVRRNLDSSMAIH GISPYAGDHNAWFVDSSANENAPMGNIIDGFSEILVCNSLDPNPTCSGENINDNYAGNLEDNYWNSLLNLVDASPTGSSVF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.008G089700 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008100 [exp]	1.00	0.9975
AT1G73680		ALPHADOX2 ,ALPH...	alpha dioxygenase (.1.2)		Potri.012G049500 [exp]	4.00	0.9941
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140600 [exp]	4.89	0.9927
AT4G08910			unknown protein		Potri.014G150900 [exp]	5.91	0.9935
AT3G09870			SAUR-like auxin-responsive pro...		Potri.006G125100 [exp]	6.92	0.9860
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.005G175200 [exp]	7.00	0.9916
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.013G102500 [exp]	7.07	0.9909
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.003G192600 [exp]	8.24	0.9859
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022400 [exp]	9.16	0.9886
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.008G047900 [exp]	10.67	0.9846

Compare expression of checked genes

Potri.008G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.