Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 81 / 2e-17 AP2_ERF RAP2.11 related to AP2 11 (.1) AT1G72360 58 / 2e-09 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G24590 58 / 4e-09 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT3G20310 56 / 1e-08 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT4G27950 56 / 2e-08 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT3G16770 55 / 2e-08 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT1G28370 54 / 2e-08 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT4G11140 55 / 4e-08 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT4G23750 55 / 4e-08 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G53170 52 / 9e-08 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087800 [exp] 226 / 2e-70 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.003G220200 [exp] 84 / 4e-18 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.013G056700 [exp] 79 / 2e-16 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.001G004700 [exp] 78 / 7e-16 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.019G036100 [exp] 76 / 2e-15 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.001G453100 [exp] 73 / 5e-14 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.014G076702 [exp] 70 / 3e-13 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.002G153500 [exp] 70 / 3e-13 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.011G148900 [exp] 69 / 1e-12 AT5G19790 65 / 5e-12 related to AP2 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036793 [exp] 147 / 2e-39 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 146 / 2e-39 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10012703 [exp] 135 / 7e-36 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10030430 [exp] 122 / 3e-31 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10001298 [exp] 89 / 3e-21 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10013614 [exp] 79 / 4e-16 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10013764 [exp] 78 / 8e-16 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10010652 [exp] 78 / 8e-16 AT5G19790 155 / 6e-46 related to AP2 11 (.1) Lus10039171 [exp] 75 / 8e-15 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10036556 [exp] 69 / 6e-14 AT5G19790 104 / 2e-28 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.008G091300.1 pacid=42807844 polypeptide=Potri.008G091300.1.p locus=Potri.008G091300 ID=Potri.008G091300.1.v4.1 annot-version=v4.1 ATGGCGAGGAAGAGAAAGGCAGGTGAGGGTGAAGAAGAGAGGGTAAGCAATGATGGGAACGTGGGATGGGACCAAATGATGGAGGAGGCTGAATCACTCC ATGGAGTTCGGAGAGCTCGAAAACGATACCTTGGGGTGAGGCAGCGGCCGTCAGGCCGATGGGTGGCAGAGATAAAAGACACAATTCAGAAGATTAGAGT GTGGTTGGGGACTTATGATACTGCTGAGGAAGCCGCAAGAGCTTATGACGAGGCAGCTTGCTTGCTCCGTGGAGCTAATACTCGGACAAATTTCTGGCCT TGCTCCCCGTCTTCTCATTCAAAGCCAGCTCTTCCCCCAAAGATTGTCAACCTCCTGTTACTCAGGATTAAAGCTAGACACAATTCACTGACACAGACCA CTACTTTCCCCGTTAACCAACAGGAGCAAGAAGCCAGAGAACAGGAAAACCAGTTCGACCCTTTCTTCGAAATGCCTGGAGATATCAGCATTGTTGAAAA TAGTGATACTGCTAATAGCACTGCTGATACTATGACTATCAGCGATCACACGAGTGGTTTCTTTGAATCACGTTATATTACAGAAGATCATGGGAGCACA AGCACATTTGAAGTGGATGATAGTTGGAGTAATGTTGATGGCAGTGGTCAAGGTGGACAGGAAGAAGGGAGAGGAGAAGAAGAGATTGATATGGGGCTGA TTGATTTTCAATTTGATGATGCATTAGGATCATCTTTCTACCATTCTCCATTTGATATAGCACAGGAGATGATGGAGCCAATGGAGCAGGAACATCATGG GGATGAGCCACCAATGATTAGAGAGATCATGAAGCGGTGGAAGCACGAACGGAAGTTCTCAGCTTCTCTTTATGCCTACAATGGGGTATCCGAATGTTTA AGGCTGGCATTCAGACCAGGAATGCCAGCGGTGGCAAATGGTGGGTATGAGTTGCCATCTAACCTTGGGATCAATAGTAATAACAACGAGGAGGAAAAGA AAAGAGATGACATGGGAAAGGATGCCAAAGAGGAGGTGCAAGAAGAAGTCGAGATTCCACAAACACCAACAGAAAAGGGGTCCTCATCTTCTTCCTCTTC TTTGAGCAAGGAAGATGGTGAATTGTCTCTCTGGAGCTCGCTCGATCTTCCTCCTATCTGCTTCAATAATATTTAG
AA sequence Show only first row Show all	>Potri.008G091300.1 pacid=42807844 polypeptide=Potri.008G091300.1.p locus=Potri.008G091300 ID=Potri.008G091300.1.v4.1 annot-version=v4.1 MARKRKAGEGEEERVSNDGNVGWDQMMEEAESLHGVRRARKRYLGVRQRPSGRWVAEIKDTIQKIRVWLGTYDTAEEAARAYDEAACLLRGANTRTNFWP CSPSSHSKPALPPKIVNLLLLRIKARHNSLTQTTTFPVNQQEQEAREQENQFDPFFEMPGDISIVENSDTANSTADTMTISDHTSGFFESRYITEDHGST STFEVDDSWSNVDGSGQGGQEEGRGEEEIDMGLIDFQFDDALGSSFYHSPFDIAQEMMEPMEQEHHGDEPPMIREIMKRWKHERKFSASLYAYNGVSECL RLAFRPGMPAVANGGYELPSNLGINSNNNEEEKKRDDMGKDAKEEVQEEVEIPQTPTEKGSSSSSSSLSKEDGELSLWSSLDLPPICFNNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.008G091300 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170000 [exp]	5.00	0.8125
AT1G66180			Eukaryotic aspartyl protease f...		Potri.004G085000 [exp]	6.48	0.7785
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	6.48	0.8089
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.001G174500 [exp]	8.83	0.7928
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	10.00	0.7911
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.006G251900 [exp]	11.61	0.7772	Pt-CESA4.4
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	12.96	0.7782
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.009G096000 [exp]	14.89	0.7183
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	15.09	0.7797
AT4G21020			Late embryogenesis abundant pr...		Potri.004G046000 [exp]	18.16	0.7293	Pt-PM32.1

Compare expression of checked genes

Potri.008G091300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.