Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RAV2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25560 422 / 6e-148 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G68840 413 / 2e-144 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G13260 406 / 1e-141 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G25730 364 / 1e-125 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT3G61970 169 / 9e-50 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 168 / 2e-49 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G50680 165 / 7e-48 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G01030 164 / 3e-47 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT1G51120 161 / 3e-46 AP2_ERF AP2/B3 transcription factor family protein (.1) AT5G06250 156 / 4e-45 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129200 [exp] 631 / 0 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.018G109201 [exp] 194 / 7e-59 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 186 / 8e-56 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.003G212800 [exp] 181 / 8e-54 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.014G107200 [exp] 166 / 1e-47 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.002G181600 [exp] 165 / 5e-47 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 165 / 9e-47 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.001G452200 [exp] 163 / 5e-46 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.006G208100 [exp] 155 / 1e-43 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041487 [exp] 420 / 5e-147 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021707 [exp] 376 / 1e-129 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 247 / 3e-81 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10036282 [exp] 167 / 6e-49 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10021326 [exp] 155 / 2e-44 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10004226 [exp] 132 / 4e-35 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10026212 [exp] 105 / 9e-27 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10025226 [exp] 77 / 4e-15 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 74 / 5e-14 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 71 / 5e-13 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G117100.1 pacid=42805945 polypeptide=Potri.008G117100.1.p locus=Potri.008G117100 ID=Potri.008G117100.1.v4.1 annot-version=v4.1 ATGGATGGAAGCTGCGTAGATGAGAGCACAACTAGTAGTACTGATAACTCCATATCCATCACACCAACCTCCCTCACCCCTTCTCCACCTCCAGCTACCA CAACAAAATCACCACCTGAGTCACTTTGCCGTGTTGGGAGCGGCAATAGTGTGATTCTTGATTTGGAATTAGGTGTCGAAGCCGAATCAAGAAAGCTCCC TTCCTCTAAATACAAAGGGGTTGTCCCCCAACCAAATGGTCGCTGGGGTGCACAGATTTACGAGAAGCACCAGCGTGTGTGGCTTGGGACATTCAATGAA GAAGATGAAGCAGCGAGAGCCTATGATACCGCTGCGCAAAGGTTTCGTGGAAGGGATGCCGTGACTAACTTCAAACAGGTTAATGAAACTGAAGATGATG AGATAGAGGCTGCTTTTCTGATCACTCATTCAAAAGCTGAAATCGTTGACATGTTAAGGAAACATACGTACAGCGATGAGCTAGAGCAAAGCAAAAGGAA CCAAAGGAGTAACAATGGGGTAAATGGGAAGCAATACAAGAATACAGCAAACTATGGGAGTAATAGTTATGACCATGGTTGTGGCCGGGTGTTGAAAGCG CGTGAACAGCTTTTCGAGAAAGCTGTGACTCCAAGTGACGTTGGGAAATTGAATCGGCTTGTCATACCAAAACAACATGCAGAAAAGCATTTTCCTTTGC AGAGTACATCAAGCTGTAGTACTAAGGGTGTGTTGCTTAACCTGGAAGATATGAGTGGTAAAGTGTGGAGGTTTCGTTATTCTTATTGGAATAGTAGCCA GAGTTATGTTTTGACCAAAGGGTGGAGCCGATTTGTTAAAGAAAAGAGCTTGAAAGCTGGTGACATTGTTTGCTTTCAAAGATCAACAGGGCCAGATAAG CAGCTTTACATTGATTGGAAAGCAAGAAGCGGGTCCAACCAGGTCCAGCCGGTTCAACCGATTCAGATGGTGAGGTTGTTTGGGGTCAACATCTTTAACG TACCTGGGATGGAAAATGGGTGTAATGGGAAGAGATCAGTGAGAGAAATGGAGCTTTTGTCGTTAGATCATCAGTATAGCAAGAAACAAAGGATCATTGG AGCTTTGTAA
AA sequence Show only first row Show all	>Potri.008G117100.1 pacid=42805945 polypeptide=Potri.008G117100.1.p locus=Potri.008G117100 ID=Potri.008G117100.1.v4.1 annot-version=v4.1 MDGSCVDESTTSSTDNSISITPTSLTPSPPPATTTKSPPESLCRVGSGNSVILDLELGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNE EDEAARAYDTAAQRFRGRDAVTNFKQVNETEDDEIEAAFLITHSKAEIVDMLRKHTYSDELEQSKRNQRSNNGVNGKQYKNTANYGSNSYDHGCGRVLKA REQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSTSSCSTKGVLLNLEDMSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVCFQRSTGPDK QLYIDWKARSGSNQVQPVQPIQMVRLFGVNIFNVPGMENGCNGKRSVREMELLSLDHQYSKKQRIIGAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25560	AP2_ERF	EDF1, TEM1	TEMPRANILLO 1, ETHYLENE RESPON...		Potri.008G117100 [exp]	0	1	Pt-RAV2.1
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.001G311700 [exp]	5.09	0.7171	MSJ1.1
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G308600 [exp]	16.64	0.7266
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.002G022700 [exp]	24.49	0.6314
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	25.63	0.7081
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Potri.013G067000 [exp]	27.01	0.6995
AT5G54660			HSP20-like chaperones superfam...		Potri.001G416200 [exp]	30.29	0.6528
AT2G40390			unknown protein		Potri.010G183100 [exp]	30.78	0.6852
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.002G068700 [exp]	33.04	0.7014
AT5G64250			Aldolase-type TIM barrel famil...		Potri.017G051800 [exp]	41.37	0.6580
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.007G048900 [exp]	47.56	0.6423

Compare expression of checked genes

Potri.008G117100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.