Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68670 298 / 6e-99 GARP myb-like transcription factor family protein (.1) AT1G25550 287 / 8e-95 GARP myb-like transcription factor family protein (.1) AT1G13300 268 / 2e-87 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT2G03500 186 / 6e-55 GARP Homeodomain-like superfamily protein (.1) AT3G25790 141 / 1e-38 GARP myb-like transcription factor family protein (.1) AT4G37180 120 / 1e-30 GARP Homeodomain-like superfamily protein (.1.2) AT1G49560 110 / 2e-27 GARP Homeodomain-like superfamily protein (.1) AT4G28610 74 / 3e-14 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G59570 71 / 2e-13 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT3G16857 71 / 3e-13 GARP ARR1 response regulator 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128900 [exp] 473 / 3e-167 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 173 / 2e-49 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.009G106600 [exp] 171 / 5e-49 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 166 / 3e-47 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.007G039400 [exp] 147 / 1e-40 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 134 / 7e-36 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.006G155200 [exp] 134 / 4e-35 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.018G111300 [exp] 75 / 2e-14 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 74 / 5e-14 AT2G25180 386 / 8e-126 response regulator 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021699 [exp] 309 / 2e-103 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 306 / 5e-102 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10041485 [exp] 194 / 9e-58 AT1G25550 288 / 2e-94 myb-like transcription factor family protein (.1) Lus10043304 [exp] 185 / 8e-54 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10034280 [exp] 175 / 2e-51 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10019452 [exp] 144 / 6e-38 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 135 / 5e-36 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10012056 [exp] 125 / 3e-32 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 125 / 3e-32 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10009334 [exp] 122 / 5e-32 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G117500.1 pacid=42807483 polypeptide=Potri.008G117500.1.p locus=Potri.008G117500 ID=Potri.008G117500.1.v4.1 annot-version=v4.1 ATGGATTTTGCTGAGAAAATACAAAGGTGTGGTGAATATGTAGAAGCTTTAGAAGAAGAAAGACGCAAGATTCAAGTCTTTGAACGCGAGCTTCCTTTGT GTTTAGAGCTTGTTACTCAAGCGATTGAGGCATGTAAGAGGGAGTTATCAGGGACAACTACGGAGTATAACATGCATGGACAATCAGAATGCTCTGAGCA GACATCAAGTGAAGGGCCGGTTTTAGAGGAATTTATTCCTATCAAGAGAACTCACTCTTATGATGAAAATGATAATGAAAATGACGATCATCAAGAGCAG CAATCACATGATAATAGTAAGAGAAACAAGACTAGCATCAGCAGCGGTAACAATGATCACAAGAAGAAATCTGATTGGCTTAGATCTGTCCAGTTGTGGA ATCACTCCCCGGATCTACCACAAAAACAGGATCTGCCAAGAAAGGCAGCGGTGACAGAAGTGAAAAGAAATGGGGCTGGAGGTGCATTTCAGCCCTTCCA CAGGGAGAAAAGTATAGGGAAGACTAGTAATCAGGCAATTGCCAAGGCACCAACTTCAGTGCCCGCTTCCACAACAAGTTCAACAGCGGTTGTTGCGACA GGAGGGATTGGTGGTGGAAGCAATAAAAAGGAAGACATAGATGGGGGAAATCAAAGAAAGCAAAGAAGGTGTTGGTCACCTGAGCTGCATAGAAGGTTCT TACATGCTCTTCGACAGCTTGGTGGTTCACATGCTGCAACACCAAAGCAAATTAGGGAGCTAATGAAGGTGGATGGACTTACTAATGATGAAGTCAAGAG TCATTTACAGAAATACCGTCTGCATACAAGAAGACCAAGCCCTACTATCCACAATAACAGCAATCAACAGGCACCACAATTTGTAGTTGTTGGTGGTATC TGGGTTCCACCACCCGAATATGCAGCAGTGGCTGCCACAACCGCCTCAGCGGAAACTTCCCCTATTTCCGCTGCCAACGGAATCTATGCACCAATAGCTG CAGCACCACCCACAGTCCCTCAAAAGCCACACCATGTACAATATGAGCCCTTGCAATCAGAAGGAGGGGGCAGTCATAGTGAAGGGGGTGCTCATTCTAA TAATTCCCCTGCTACATCTTCCTCCACACATACTACAACAACGTAA
AA sequence Show only first row Show all	>Potri.008G117500.1 pacid=42807483 polypeptide=Potri.008G117500.1.p locus=Potri.008G117500 ID=Potri.008G117500.1.v4.1 annot-version=v4.1 MDFAEKIQRCGEYVEALEEERRKIQVFERELPLCLELVTQAIEACKRELSGTTTEYNMHGQSECSEQTSSEGPVLEEFIPIKRTHSYDENDNENDDHQEQ QSHDNSKRNKTSISSGNNDHKKKSDWLRSVQLWNHSPDLPQKQDLPRKAAVTEVKRNGAGGAFQPFHREKSIGKTSNQAIAKAPTSVPASTTSSTAVVAT GGIGGGSNKKEDIDGGNQRKQRRCWSPELHRRFLHALRQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNSNQQAPQFVVVGGI WVPPPEYAAVAATTASAETSPISAANGIYAPIAAAPPTVPQKPHHVQYEPLQSEGGGSHSEGGAHSNNSPATSSSTHTTTT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68670	GARP		myb-like transcription factor ...		Potri.008G117500 [exp]	0	1
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Potri.010G132200 [exp]	4.89	0.6709
AT1G22610			C2 calcium/lipid-binding plant...		Potri.013G107700 [exp]	7.07	0.7011
AT4G16380			Heavy metal transport/detoxifi...		Potri.016G006700 [exp]	9.79	0.6987
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Potri.002G176700 [exp]	10.81	0.7076	CRK3
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Potri.018G128100 [exp]	11.40	0.6701
AT1G80610			unknown protein		Potri.017G053900 [exp]	15.49	0.6530
					Potri.008G125400 [exp]	21.93	0.6172
AT1G80870			Protein kinase superfamily pro...		Potri.001G043700 [exp]	22.29	0.6799
AT5G13660			unknown protein		Potri.010G209300 [exp]	23.36	0.6415
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.018G107600 [exp]	24.18	0.6853

Compare expression of checked genes

Potri.008G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.