Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ERF79
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25890 120 / 2e-31 AP2_ERF CRF11 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) AT1G68550 99 / 2e-23 AP2_ERF CRF10 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) AT4G27950 62 / 1e-10 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G23750 61 / 2e-10 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G43160 58 / 7e-10 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT1G12890 58 / 9e-10 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G11140 59 / 1e-09 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT3G61630 58 / 2e-09 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT1G28160 57 / 2e-09 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G72360 56 / 3e-09 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125600 [exp] 390 / 2e-136 AT3G25890 95 / 6e-22 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.012G032900 [exp] 64 / 3e-11 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.003G136300 [exp] 61 / 2e-10 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.002G201600 [exp] 59 / 7e-10 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.019G131300 [exp] 59 / 1e-09 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.001G094800 [exp] 59 / 1e-09 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.001G163700 [exp] 59 / 1e-09 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.014G126100 [exp] 58 / 2e-09 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.003G071700 [exp] 58 / 2e-09 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035018 [exp] 237 / 2e-76 AT3G25890 150 / 2e-42 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10021678 [exp] 237 / 3e-76 AT3G25890 154 / 4e-44 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10034316 [exp] 210 / 3e-66 AT1G68550 151 / 2e-43 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041456 [exp] 188 / 2e-57 AT1G68550 146 / 3e-41 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10027573 [exp] 62 / 9e-11 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10032353 [exp] 62 / 1e-10 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10033938 [exp] 62 / 1e-10 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10003601 [exp] 61 / 3e-10 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10039324 [exp] 59 / 1e-09 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10017550 [exp] 59 / 1e-09 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.008G120100.3 pacid=42808585 polypeptide=Potri.008G120100.3.p locus=Potri.008G120100 ID=Potri.008G120100.3.v4.1 annot-version=v4.1 ATGAGAAAAATCCGTGTCATCTGTAATGATCCATATGCCACCGAAACTGATTCGAGCGATGACGAATCTGATAAAAGATCCTTAAAAAAACGTTTCGTGC GAGAAATCAATATTCCTCTTGCTGTTTCTCCCCAGCCGAAAGCCCTTGAGCCTGAGAGCTCCTGTCAAGACAGTAATAATAGCGCTAAACCCCCCAGTAA GAGGAGAAGGGTTTTGCCTAAAACCCCAACATCAACAACCGAAGAAAAGAAACTAGCACCGAAGAAACCTGTTGGTGTCAGGCAAAGGAAATGGGGTAAA TGGGCAGCTGAGATTAGGAATCCAGTGACCAAAGTGAGGACTTGGTTGGGTACTTTCAATACTCTCGAAGAAGCTGCGCAAGCCTACGAGGCGAAGAAGC AGGAGTATGAGGCTCTTGCTTTGACTATGGCTGCCTCTGAGAAAAGCCAAATCATGTCATCATCTGCTGGTGTCTTACAATCTCATTCTCACAGTAGCAG CAAAAATGAAGGCAGTTCTGCTTCCGATGAAACTGATGATAGCGTAGTTTCGCATACTTCCCCAGCTTCTGTTCTTGAACTTGACACTTCTGTGGTGTCA AATGTCACTGGTGATTGTGGTCTTTTGATTAAAGATGAAGATATTTGTGCCTCTGTTGCGGATCTTGATATACCTGATCTGGCTTTTATGACCGATCCTT TGGCTTCTTGTCCGTTTGATCATGATCTTAACCTTGGACAGGAGGTCGGGAATCTTATTGATGAGTTTGGTCGATTCTATGATGATTACTGTGGCATTGT TGATCTTGATATCTGCGGGCTAAATAGTGATGAACCAAGCGATCTTCCTGATTATGATTTCGAGTTTGGCAACGAGGAGTTTTCTTATTTGGATGATCAT CAACAGAAACCCCTCAACATTGCATGCCTATAA
AA sequence Show only first row Show all	>Potri.008G120100.3 pacid=42808585 polypeptide=Potri.008G120100.3.p locus=Potri.008G120100 ID=Potri.008G120100.3.v4.1 annot-version=v4.1 MRKIRVICNDPYATETDSSDDESDKRSLKKRFVREINIPLAVSPQPKALEPESSCQDSNNSAKPPSKRRRVLPKTPTSTTEEKKLAPKKPVGVRQRKWGK WAAEIRNPVTKVRTWLGTFNTLEEAAQAYEAKKQEYEALALTMAASEKSQIMSSSAGVLQSHSHSSSKNEGSSASDETDDSVVSHTSPASVLELDTSVVS NVTGDCGLLIKDEDICASVADLDIPDLAFMTDPLASCPFDHDLNLGQEVGNLIDEFGRFYDDYCGIVDLDICGLNSDEPSDLPDYDFEFGNEEFSYLDDH QQKPLNIACL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Potri.008G120100 [exp]	0	1	ERF79
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.008G120050 [exp]	2.44	0.7523
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G130600 [exp]	13.11	0.7031
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	17.49	0.6561
AT2G31410			unknown protein		Potri.014G145600 [exp]	19.59	0.6632
AT3G51270			protein serine/threonine kinas...		Potri.017G001100 [exp]	20.04	0.7156
AT1G63980			D111/G-patch domain-containing...		Potri.003G132600 [exp]	22.49	0.6290
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Potri.001G071700 [exp]	22.58	0.7125
AT3G53940			Mitochondrial substrate carrie...		Potri.016G103300 [exp]	26.49	0.6624
AT5G41190			unknown protein		Potri.003G124700 [exp]	30.65	0.7024
AT4G11140	AP2_ERF	CRF1	cytokinin response factor 1 (....		Potri.003G136300 [exp]	35.79	0.6915	ERF88

Compare expression of checked genes

Potri.008G120100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.