Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01170 747 / 0 BAT1 bidirectional amino acid transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119100 [exp] 889 / 0 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.007G100700 [exp] 438 / 3e-149 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2) Potri.002G078100 [exp] 424 / 8e-144 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2) Potri.002G078300 [exp] 311 / 1e-101 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2) Potri.002G078501 [exp] 266 / 2e-83 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2) Potri.002G137000 [exp] 43 / 0.0005 AT1G05940 627 / 0.0 cationic amino acid transporter 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034628 [exp] 819 / 0 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10035260 [exp] 724 / 0 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10039616 [exp] 440 / 5e-150 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2) Lus10028561 [exp] 439 / 2e-149 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2) Lus10029533 [exp] 130 / 3e-33 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Potri.008G125100.2 pacid=42808475 polypeptide=Potri.008G125100.2.p locus=Potri.008G125100 ID=Potri.008G125100.2.v4.1 annot-version=v4.1 ATGGGAGGCGGAACGACAGATCTGAATGAAGATACAGCAGGTGTTTATCTCCCCCTTCGGAATGATGATGGCATTGTTAATGATTCGGGTGACAGTCGAT TGAAACAGCTGGGTTACAAGCAAGAACTTAGCCGTACCCTCTCGCTAATTGCAAATTTCTCAGTGACCTTCTCCATTGTGTCAGTCCTCACTGGTCTGAC AACGATGTACAGTTCGGGTCTAACCTATGGTGGGCCAGTTACGATGGTATATGGGTGGCCGGTAGTGGGTATGCTGACCCTCACCGTGGGGATGTCAATG GCCGAGATTTGTTCTGCTTATCCCACTTCTGGAGGGCTTTACTTTTGGAGTGCAAGGCTTTGTGGCAAAGATTGGGGGCCTCTTGCTTCTTGGCTCACTG GCTGGTTCAACATTGTTGGTCAGTGGGCTGTTACAACCAGTGTAGATTTCTCACTTGCACAGCTGATTCAGGTTATCATTCTCCTAAGCACAGGTGGAAA AAATGGTGGTGGATATGAAGCATCCAAGTATGTAGTTATTGCTATGCATGGGGGGATTTTACTACTGCATGCTGCACTAAATAGTCTTCCCATCTCACTC TTATCTTTCTTCGGACAGCTGGCTGCTGCCTGGAATCTTGTAGGTGTTGTGGTTCTTACAATACTCATTCCCCTTGTTGCAACGGAAAGGGCTAGTGCCA AGTTTGTGTTTACACACTTCAACACTGATAATGGGGATGGAATCAATAGTAAAGCTTACATTTTTGTTCTGGGGCTTTTGATGAGTCAATATACCCTCAC TGGGTATGACGCATCTGCTCATATGACAGAGGAAACTAAGAATGCTGATAAGAATGGACCAAAAGGAATAATTAGCGCCATCGGGATATCAGTTATATTT GGATGGTTTTACATACTTGGTATCACCTTTGCAGTAACCAACATCTCTTACCTCTTGAGTGAAGACAATGATGCTGGTGGTTATGCCATTGCTGAAATAT TTTACCTAGCTTTTAAGAGAAGATATGGCAGTGGGGTTGGTGGAATTATCTGTTTGGGAGTGGTTGCTGTTGCCATATTCTTCTGTGGAATGAGTTCCGT TACAAGCAACTCTAGGATGGCCTATGCGTTTTCTAGAGATGGAGCCATGCCACTCTCATCACTTTGGCACAAAGTGAACAATCAGGAGGTCCCCATAAAT GCTGTTTGGCTCTCTGTGGTCATATCATTCTGCATGGCATTGACGTATCTTGGAAGTGAGGTGGCATTTCAGGCCATGGTTTCTATTGCTACGATTGGGC TGTACATTGCTTACGCCCTACCCATCTTCTTCAGGGTGACTTTGGCACGCAAGTCTTTTATCCCGGGACCATTCAACTTGGGTCGCTATGGTGTCCTTGT TGGATGGATTGCAGTCCTCTGGGTAGCAACTATCTCAATCCTCTTCTCATTGCCTGTAACCTACCCCATCACTAACGAGACACTCAACTACACTCCTGTT GCTGTTGGTGGCTTGCTAATTCTTACCATCTCTTCTTGGATCTTGAGTGCTCGTCATTGGTTCAGAGGTCCTGTAACCAATGTAGAAAGCTAA
AA sequence Show only first row Show all	>Potri.008G125100.2 pacid=42808475 polypeptide=Potri.008G125100.2.p locus=Potri.008G125100 ID=Potri.008G125100.2.v4.1 annot-version=v4.1 MGGGTTDLNEDTAGVYLPLRNDDGIVNDSGDSRLKQLGYKQELSRTLSLIANFSVTFSIVSVLTGLTTMYSSGLTYGGPVTMVYGWPVVGMLTLTVGMSM AEICSAYPTSGGLYFWSARLCGKDWGPLASWLTGWFNIVGQWAVTTSVDFSLAQLIQVIILLSTGGKNGGGYEASKYVVIAMHGGILLLHAALNSLPISL LSFFGQLAAAWNLVGVVVLTILIPLVATERASAKFVFTHFNTDNGDGINSKAYIFVLGLLMSQYTLTGYDASAHMTEETKNADKNGPKGIISAIGISVIF GWFYILGITFAVTNISYLLSEDNDAGGYAIAEIFYLAFKRRYGSGVGGIICLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPLSSLWHKVNNQEVPIN AVWLSVVISFCMALTYLGSEVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGVLVGWIAVLWVATISILFSLPVTYPITNETLNYTPV AVGGLLILTISSWILSARHWFRGPVTNVES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.008G125100 [exp]	0	1
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.004G089300 [exp]	18.00	0.5517
					Potri.001G456100 [exp]	29.73	0.4578
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Potri.009G020500 [exp]	33.91	0.5149
AT5G08750			RING/FYVE/PHD zinc finger supe...		Potri.007G098900 [exp]	55.24	0.5062
AT1G61700			RNA polymerases N / 8 kDa subu...		Potri.003G102900 [exp]	58.58	0.4875
AT2G41050			PQ-loop repeat family protein ...		Potri.006G025100 [exp]	74.60	0.4896
AT5G47840		AMK2	adenosine monophosphate kinase...		Potri.019G078200 [exp]	81.58	0.4744
AT1G21280			unknown protein		Potri.013G092801 [exp]	116.11	0.4515
AT1G23000			Heavy metal transport/detoxifi...		Potri.004G091700 [exp]	155.28	0.4161
AT3G28700			Protein of unknown function (D...		Potri.017G077000 [exp]	191.62	0.4140

Compare expression of checked genes

Potri.008G125100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.