Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30070 491 / 3e-164 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT5G14880 463 / 2e-152 Potassium transporter family protein (.1) AT4G13420 456 / 9e-150 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G40540 456 / 1e-149 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT1G70300 447 / 3e-146 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT3G02050 436 / 5e-142 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G35060 428 / 7e-139 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G60160 426 / 1e-137 Potassium transporter family protein (.1) AT1G31120 424 / 4e-137 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 413 / 9e-133 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100800 [exp] 1267 / 0 AT2G30070 497 / 1e-166 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 489 / 5e-163 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 489 / 5e-163 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G132500 [exp] 474 / 6e-157 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.014G144900 [exp] 473 / 3e-156 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.019G056500 [exp] 468 / 5e-154 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.010G094300 [exp] 467 / 5e-154 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.009G073500 [exp] 465 / 2e-153 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.008G147400 [exp] 462 / 3e-152 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027004 [exp] 478 / 3e-158 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 470 / 5e-155 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030539 [exp] 454 / 2e-148 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10030857 [exp] 453 / 2e-148 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 452 / 3e-148 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10018324 [exp] 445 / 5e-145 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10013304 [exp] 440 / 2e-142 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10034215 [exp] 443 / 4e-142 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10012992 [exp] 431 / 2e-140 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10036221 [exp] 432 / 3e-140 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.008G140800.1 pacid=42806942 polypeptide=Potri.008G140800.1.p locus=Potri.008G140800 ID=Potri.008G140800.1.v4.1 annot-version=v4.1 ATGATTGGAGGAGGAGGAGGAGGAGGAGAGCAGGCGGGGCCTGGGCAGGAGTTGAGAGCAGCAGACCCAGCGGCGACTAAGAGGGAGTTTGTAGTGAATG TCGAGTCATCTTGCTCTGTTTCTCATAATTCCAATAGCCACTTACTTCCTCCTCGCAACAGCGCCTTCTTCATTCCACCACCACCACCACCACCACCACC GCCTACTACTACCACTACTCAGCCCAAGGAGAGAGGAAGATGGGAGACAGTGGTGCTAGCATACAAGACACTTGGAGTTGTCTTCGGAGGGCTTGTGACA TCACCATTATATGTATACCCATCAATGCCATTGAAGTCTCCTACTGAACAGGACTACTTGGGAATCTATAGCATCATGTTTTGGACTCTCACACTCATTG GGGTTGTTAAATATACCAGTATAGCTCTCAAGGCCGATGATCAGGGCGAAGGTGGAACATTTGCTTTGTACTCATTGCTCTGCAGGAATATGAATATTGG TATCCTTTCCTCCAAACAAGTACAGACAAACTCAAGTTTCTCGCACTCTGTCTTGCATGAAGGCACTGAGAATAAAAGTAGGCTTGGAAATTTTTTTGAA AGAAGCATAGCTGCCAGAAGGGCACTACTTTTCATTGCTATGTTAGGCACATGCATGCTGATTGGGGATGGTATACTTACACCTGCAATCTCAGTGTTGT CGGCTATGGAGGGTATAAGAGCACCTTTTCCCTCTGTCAGCAAATCTTCAGTGGAAGCACTTTCTGCAGTAGTTCTAGTTGTTCTTTTTCTGCTACAAAA GTTTGGCACTTCCAGAGTGAGTTTTATGTTTTCCCCAATAATGGGTGCATGGACCTTGTGTACTCCGTTAGTAGGGATTTATAGCATCATTCAGCATTAT CCTAGCATATTCAAGGCTTTGTCTCCTCACTACATATTCCATTTCTTTTGGAGAAACGGAAAGGAAGGATGGCTGTTGCTTGGTGGAACTGTTCTCTGTA TCACAGGTTCTGAAGCACTTTTTGCTGATCTTGGTCATTTTAACAGAAGCTCAATTCAGATTGCCTTTTTGCTTACAATATATCCATCTCTTGTTCTGAC GTATGCGGGGCAAACTGCGTACCTTATCAAGAACCCAAATGATCATGATGATGGATTTTACAAGTTTATACCTACAGCGATTTACTGGCCAATCTTTATC ATAGCCACGCTAGCTGCTATTGTTGCAAGCCAGTCTCTGATATCAGCCACCTTCTCGGTCATCAAGCAATCAGTTGTACTGGATTATTTTCCTCGTGTTA AGGTGGTGCATACATCTTCTAACAAAGAGGGTGAAGTCTACTCCCCAGAAGTCAATTACATCCTCATGATTCTTTGTGTTGCAGTGATACTTATTTTTGG AGATGGAAAAGATATCGGGAATGCTTTTGGTGTTGTTGTTAGTCTAGTAATGCTCATCACCACAATATTACTGACGTTAGTTATGATCATGATATGGAGA ACTCCACCATGGCTAGTTGCAGTTTACTTCTTCACATTTTTTACAATGGAAGGGGTTTATTCCAGTGCGGTTTTGAGTAAAATACCTGAGGGTGGATGGA TTCCTTTTGCCATATCTTTTATCCTTGCTTTCATTATGTTTGGCTGGTTTTATGGAAGGCAGAAGAAGATAGAGTATGAGCTGACTCACAAGATAGACTT GGGAAGACTTGGATTGCTATTATCCGAGCCAGGTATCCAGAGGGTTCCAGGATTGTGCTTCTTTTACAGCAATATTCAAGATGGCCTGACGCCTATCCTT GGACATTATATTAAAAACATGAAATCAGTACACAAAGTCACTATTTTCACAACACTTCGATATTTGTTGGTGCCTAAGGTTGCTGCACATGAGAGGATCG TTGTCAACAAACTTGGCCTCGAAGGAACTTATGGATGCGTGATTCAATATGGCTATGCAGATTCCTTAAATCTCGAAGGAGATGACATTGTAAGTCAAGT TACTGATAGCTTGCAGGTGTATCTACAGAACTGCTCTAGCTGTTTAACATCTGAACATCACGAGGTTCAGGAAGAGATTTCTGCTTTTGAAGAAGCAAAG CTGGCCGGAGTGGTTCACATTCGAGGGAAGACGAGGTTTTATATAGGCAAGAACTGTAGTTGGTTTGAAAGAAGCATGCTTGCATTTTATGAATTCATGC ACAGTAACTGCAGGTCTGCACTGCCAGCCCTTGGGGTGCCGCCACCACACCGTATCGAGGTTGGAATGCTTTATGAAGCCTGA
AA sequence Show only first row Show all	>Potri.008G140800.1 pacid=42806942 polypeptide=Potri.008G140800.1.p locus=Potri.008G140800 ID=Potri.008G140800.1.v4.1 annot-version=v4.1 MIGGGGGGGEQAGPGQELRAADPAATKREFVVNVESSCSVSHNSNSHLLPPRNSAFFIPPPPPPPPPPTTTTTQPKERGRWETVVLAYKTLGVVFGGLVT SPLYVYPSMPLKSPTEQDYLGIYSIMFWTLTLIGVVKYTSIALKADDQGEGGTFALYSLLCRNMNIGILSSKQVQTNSSFSHSVLHEGTENKSRLGNFFE RSIAARRALLFIAMLGTCMLIGDGILTPAISVLSAMEGIRAPFPSVSKSSVEALSAVVLVVLFLLQKFGTSRVSFMFSPIMGAWTLCTPLVGIYSIIQHY PSIFKALSPHYIFHFFWRNGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQIAFLLTIYPSLVLTYAGQTAYLIKNPNDHDDGFYKFIPTAIYWPIFI IATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGDGKDIGNAFGVVVSLVMLITTILLTLVMIMIWR TPPWLVAVYFFTFFTMEGVYSSAVLSKIPEGGWIPFAISFILAFIMFGWFYGRQKKIEYELTHKIDLGRLGLLLSEPGIQRVPGLCFFYSNIQDGLTPIL GHYIKNMKSVHKVTIFTTLRYLLVPKVAAHERIVVNKLGLEGTYGCVIQYGYADSLNLEGDDIVSQVTDSLQVYLQNCSSCLTSEHHEVQEEISAFEEAK LAGVVHIRGKTRFYIGKNCSWFERSMLAFYEFMHSNCRSALPALGVPPPHRIEVGMLYEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.008G140800 [exp]	0	1
AT4G37810			unknown protein		Potri.002G112900 [exp]	8.24	0.9324
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G155050 [exp]	18.49	0.8993
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.009G154300 [exp]	24.37	0.8942
AT5G05800			unknown protein		Potri.015G012100 [exp]	26.90	0.8977
AT1G12300			Tetratricopeptide repeat (TPR)...		Potri.019G062266 [exp]	29.73	0.8776
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	30.16	0.8737
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.005G204800 [exp]	35.24	0.8256
AT3G30390			Transmembrane amino acid trans...		Potri.002G114300 [exp]	37.09	0.8908
AT5G03990			unknown protein		Potri.006G045900 [exp]	40.24	0.8900
					Potri.003G030200 [exp]	44.98	0.8314

Compare expression of checked genes

Potri.008G140800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.