Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14600 130 / 3e-36 GARP Homeodomain-like superfamily protein (.1) AT2G02060 120 / 2e-32 GARP Homeodomain-like superfamily protein (.1) AT2G40260 122 / 9e-32 GARP Homeodomain-like superfamily protein (.1) AT2G38300 116 / 3e-30 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G42660 109 / 2e-28 GARP Homeodomain-like superfamily protein (.1) AT5G42630 89 / 5e-21 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT4G17695 91 / 7e-21 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1) AT1G32240 92 / 8e-21 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT5G16560 91 / 1e-20 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT4G04580 86 / 2e-20 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099600 [exp] 421 / 8e-150 AT1G14600 126 / 9e-35 Homeodomain-like superfamily protein (.1) Potri.010G185700 [exp] 134 / 8e-37 AT2G40260 188 / 5e-56 Homeodomain-like superfamily protein (.1) Potri.008G071700 [exp] 130 / 4e-35 AT2G40260 166 / 2e-47 Homeodomain-like superfamily protein (.1) Potri.004G010000 [exp] 127 / 2e-34 AT2G02060 120 / 3e-32 Homeodomain-like superfamily protein (.1) Potri.011G006350 [exp] 125 / 5e-34 AT2G02060 115 / 8e-31 Homeodomain-like superfamily protein (.1) Potri.004G057900 [exp] 126 / 1e-33 AT2G38300 139 / 7e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.009G075100 [exp] 122 / 2e-32 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1) Potri.016G121800 [exp] 120 / 3e-31 AT2G38300 183 / 1e-54 myb-like HTH transcriptional regulator family protein (.1) Potri.001G280000 [exp] 118 / 1e-30 AT2G38300 140 / 2e-38 myb-like HTH transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001149 [exp] 127 / 9e-35 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1) Lus10012239 [exp] 120 / 2e-31 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10002207 [exp] 119 / 2e-31 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10035093 [exp] 119 / 8e-31 AT1G14600 103 / 1e-25 Homeodomain-like superfamily protein (.1) Lus10040945 [exp] 117 / 2e-30 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1) Lus10029225 [exp] 112 / 3e-30 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10007279 [exp] 104 / 2e-27 AT2G38300 107 / 1e-28 myb-like HTH transcriptional regulator family protein (.1) Lus10017442 [exp] 103 / 3e-25 AT2G38300 148 / 3e-41 myb-like HTH transcriptional regulator family protein (.1) Lus10007513 [exp] 102 / 5e-25 AT2G40260 145 / 3e-40 Homeodomain-like superfamily protein (.1) Lus10035387 [exp] 90 / 2e-21 AT1G32240 222 / 1e-71 KANADI 2, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G142000.1 pacid=42807232 polypeptide=Potri.008G142000.1.p locus=Potri.008G142000 ID=Potri.008G142000.1.v4.1 annot-version=v4.1 ATGGGTAGTTGTGGAAGGAGTGGAGCTGTGAGGCAATATGTAAGATCAAAGGTGCCTCGTTTGAGATGGACTCCTGAGCTTCATCGCTGCTTTGTTCATG CCATTGAGAGGCTCGGTGGCCAAGATAAGGCTACGCCTAAACTGGTTCTTCAGCTGATGGATGTGAAAGGACTCACCATTTCACATGTGAAAAGCCATCT CCAGATGTATAGAAGCATGAGGAGTGACCTGAGGGGACAAGATAATAGCTCCACCCAACAAAAGAGACGATCTTTTGATGACCATGATGAGTGTGTTGAA GACGTAAAACCCATTGAAGAATCAGATTCTCACTTGATGTACAGGCCTTTCTCTTCAAAAAGGGCCAGAATCGAGACCAGGAGTTCAATATCTGAGGAGA ACCTGCAATGCAGTCAAGGAATATGGGAGACAGTCTCGAATCCGTACTCTTTTGATGATTATATGGGAATAATGGAGGAAGGTAATGGAGGTGGTTTCAA ATGGGAGCAAGCCCATTCTAAGCCTCAATCGACAGCCTTCTCCCCATCACTTGACCTGTATTACTTGAACACTTCGAAACGTGAAGCGGAAGAATCTGAC CTCGTCAAGATTGCCAAGCTAGAGGATAGAATGTGCAAACCAGGAAAGGTGTACAAATCCGAGGTTACTGAAAGTGAAAGAGCAGAAGATGAAGAACCTG GTGTTTGCGAATTGTCACTTGCACTCTCCCTGCCTCTTCCTTCCTCACAGAGAAGCAATGCTTCTTCGACGAGCAAGATCAGCGAGACATTCTCATCATA CTCCAGGTCTAACTTAAAAGATTGTTCTGGCTTTTCTAGTGGAAAACGGGACATTAACTTAGATTTGTCTATTGCTCTTTGTGGTGCCTAA
AA sequence Show only first row Show all	>Potri.008G142000.1 pacid=42807232 polypeptide=Potri.008G142000.1.p locus=Potri.008G142000 ID=Potri.008G142000.1.v4.1 annot-version=v4.1 MGSCGRSGAVRQYVRSKVPRLRWTPELHRCFVHAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRSDLRGQDNSSTQQKRRSFDDHDECVE DVKPIEESDSHLMYRPFSSKRARIETRSSISEENLQCSQGIWETVSNPYSFDDYMGIMEEGNGGGFKWEQAHSKPQSTAFSPSLDLYYLNTSKREAEESD LVKIAKLEDRMCKPGKVYKSEVTESERAEDEEPGVCELSLALSLPLPSSQRSNASSTSKISETFSSYSRSNLKDCSGFSSGKRDINLDLSIALCGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.008G142000 [exp]	0	1
AT5G23170			Protein kinase superfamily pro...		Potri.004G221800 [exp]	6.16	0.7873
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.003G022800 [exp]	7.74	0.7222	NAC118
AT5G17760			P-loop containing nucleoside t...		Potri.007G020800 [exp]	17.14	0.7346
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	21.84	0.7526
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.001G457000 [exp]	22.40	0.7683	Pt-HMGR3.1
AT1G19020			unknown protein		Potri.015G070700 [exp]	23.51	0.7297
AT2G47115			unknown protein		Potri.014G115200 [exp]	25.13	0.7478
AT5G67390			unknown protein		Potri.007G053300 [exp]	25.88	0.7266
AT2G25735			unknown protein		Potri.006G244200 [exp]	26.72	0.7198
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.002G227500 [exp]	28.72	0.7179

Compare expression of checked genes

Potri.008G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.