Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60160 651 / 0 Potassium transporter family protein (.1) AT5G09400 462 / 4e-153 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT4G33530 439 / 2e-144 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT2G35060 412 / 1e-134 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 396 / 2e-128 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G13420 393 / 3e-127 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT4G19960 391 / 3e-126 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT2G40540 387 / 9e-125 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT2G30070 384 / 2e-124 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G70300 372 / 3e-119 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094400 [exp] 712 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.001G069799 [exp] 453 / 1e-151 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.003G023900 [exp] 454 / 4e-150 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G205500 [exp] 443 / 7e-146 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G123800 [exp] 404 / 1e-131 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 404 / 3e-131 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 399 / 1e-129 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.003G148200 [exp] 389 / 3e-126 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.002G237500 [exp] 391 / 5e-126 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012993 [exp] 639 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10036160 [exp] 451 / 6e-150 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10038361 [exp] 450 / 2e-149 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10003402 [exp] 452 / 3e-149 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10018324 [exp] 402 / 2e-130 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030632 [exp] 392 / 7e-127 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030857 [exp] 392 / 8e-127 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10027004 [exp] 391 / 1e-126 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10013304 [exp] 393 / 2e-126 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030539 [exp] 384 / 1e-123 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.008G147300.3 pacid=42808192 polypeptide=Potri.008G147300.3.p locus=Potri.008G147300 ID=Potri.008G147300.3.v4.1 annot-version=v4.1 ATGGAAGGAGATGAGGATCGGATTGAAGAGAGCAATGCGAGGTTGGTAGGCAGGAGTAATCATAACATTGTTGATGGTGGTAGTGTTGGTGAATCTAGGT GGGTGGATGGTAGCGAAGTGGACTCAGAGTCGCCTCCTTGGTCTTTGCTTGATGAGAACGATAGCAGACAAGGGTTTGGATCCATGAGGAGGAGGCTGGT TAAGAAGCCCAACAAAGTTAACTCTTTTGATGTTGAAGCCATGGAGATTGCTGGTGCTCACCACCACCACTCTAAGGACCTTTCAGTTTGGAAAACTCTT GCAATGGCTTTTCAGACACTTGGTGTGGTGTATGGTGACCTGGGCACAAGCCCTCTCTATGTCTTTACTGATGTTTTCAGCAAGGTGCCCATCAAGTCAG AAGTTGATATCTTGGGAGCATTGTCACTAGTTATTTACACGATTTCTCTCATTCCATTAGCAAAATATGTTTTTGTAGTGCTCAAAGCAAATGATAATGG GGAAGGAACTTCCATGGTCATAGGAGATGGTATTCTTACCCCCGCAATGTCAGTGATGTCGGCCGTGAGCGGTCTGCAAGGTGAAATATCCTGGTTTGGT ACAAATGCTGTGGTTGTTGTCTCAATCATAATCCTTGTGGGGCTGTTCAGCATACAGCAGTTTGGAACAGGGAAGGTGGGTTTCCTGTTTGCTCCGGTAC TTGGTCTGTGGTTCTTTTCTCTGGGTTCCATTGGGATTTACAATCTAGTGAAGCATGATATCAGCGTCATCAGGGCACTCAATCCAGCTTATATCTATTT TTTCTTCAAAAAGAACAGTGGTGCTGCTTGGTCAGCTCTTGGTGGTTGCGTTCTGTGCATTACAGGAGCTGAAGCCATGTTCGCTGACTTAGGGCATTTT TGCGTAGAATCCATACAGATTGCCTTTACTTGTGTAGTGTTTCCCTGTCTTCTCCTGGCTTACATGGGTCAGGCTTCATATTTGATGAAATATCCCGATT CAGCAAGCAGAATATTCTACGATTCTATTCCAGAGAGCCTGTTCTGGCCAGTCTTTGTCATTGCCACCCTCGCTGCCATGATTGCCAGCCAAGCAATGAT ATCTGCTACATTTTCGTGTGTTAAGCAAGCAATGTCTCTTGGATGCTTCCCAAGGTTGAAGATAGTTCACACCTCAAGGAAGCTGATGGGCCAAATTTAT ATCCCTGTAATCAATTATTTTCTAATGATAATGTGCATTGTTGTGGTTTCAATCTTCCGAAGAACAACAGATATTGCCAATGCATATGGCATAGCTGAAG TTGGTGTGATGATTGTGAGCACCACGCTGGTGACACTTGTGATGCTTCTAATTTGGAAGACCAACTTGTTCCTGGCTTTGTGTTTCCCGTTAGTGTTTGG GTCTGTAGAGCTCGTTTACTTGTCTGCAGTTTTATCAAAAATCAAAGAGGGAGGTTGGCTTCCGCTTGTTTTTGCTACGTTCTTTCTATGTGTGATGTAC ACTTGGAATTATGGGAGCGTGTTGAAGTACCAGAGTGAGGTGAGAGAGAAGATTTCCATGGATTTTATGCTTGAACTTGGCTCCACCCTTGGAACTGTAA GAGTTCCAGGAATCGGACTGCTGTACAATGAGCTTGTCCAAGGCATTCCCTCAATTTTTGGGCAGTTCCTGCTTAGCCTTCCAGCAATCCACTCTACTAT AGTATTTGTTTGCATCAAGTATGTTCCCGTGCCCCTCAAGAGGAAAGGTTTCTTTTCCGTAGAGTTTGTCCGAAGGACTACCATATATTCCAATGTGTTG CCCGATACGGTTACAAAGATGTCAGGAAGGTAG
AA sequence Show only first row Show all	>Potri.008G147300.3 pacid=42808192 polypeptide=Potri.008G147300.3.p locus=Potri.008G147300 ID=Potri.008G147300.3.v4.1 annot-version=v4.1 MEGDEDRIEESNARLVGRSNHNIVDGGSVGESRWVDGSEVDSESPPWSLLDENDSRQGFGSMRRRLVKKPNKVNSFDVEAMEIAGAHHHHSKDLSVWKTL AMAFQTLGVVYGDLGTSPLYVFTDVFSKVPIKSEVDILGALSLVIYTISLIPLAKYVFVVLKANDNGEGTSMVIGDGILTPAMSVMSAVSGLQGEISWFG TNAVVVVSIIILVGLFSIQQFGTGKVGFLFAPVLGLWFFSLGSIGIYNLVKHDISVIRALNPAYIYFFFKKNSGAAWSALGGCVLCITGAEAMFADLGHF CVESIQIAFTCVVFPCLLLAYMGQASYLMKYPDSASRIFYDSIPESLFWPVFVIATLAAMIASQAMISATFSCVKQAMSLGCFPRLKIVHTSRKLMGQIY IPVINYFLMIMCIVVVSIFRRTTDIANAYGIAEVGVMIVSTTLVTLVMLLIWKTNLFLALCFPLVFGSVELVYLSAVLSKIKEGGWLPLVFATFFLCVMY TWNYGSVLKYQSEVREKISMDFMLELGSTLGTVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPLKRKGFFSVEFVRRTTIYSNVL PDTVTKMSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60160			Potassium transporter family p...		Potri.008G147300 [exp]	0	1
AT4G24810			Protein kinase superfamily pro...		Potri.012G093600 [exp]	2.44	0.8229
AT1G12230			Aldolase superfamily protein (...		Potri.001G120400 [exp]	5.00	0.8081
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.010G191500 [exp]	6.32	0.8110
AT3G48610		NPC6	non-specific phospholipase C6 ...		Potri.015G097900 [exp]	7.74	0.7603
AT2G42005			Transmembrane amino acid trans...		Potri.004G206800 [exp]	10.81	0.7781
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.014G079300 [exp]	12.00	0.7312
AT1G55790			Domain of unknown function (DU...		Potri.003G101200 [exp]	16.15	0.7395
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	18.11	0.7834
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	31.74	0.7846
AT1G31870			unknown protein		Potri.001G147100 [exp]	32.61	0.7406

Compare expression of checked genes

Potri.008G147300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.