Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KUP6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70300 1221 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 1165 / 0 Potassium transporter family protein (.1) AT2G40540 994 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT3G02050 791 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G30070 765 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 754 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G60160 670 / 0 Potassium transporter family protein (.1) AT2G35060 656 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 655 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 638 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094300 [exp] 1487 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 1011 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 989 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.014G144900 [exp] 886 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 867 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 823 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 791 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 778 / 0 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 761 / 0 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030857 [exp] 1301 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 1291 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012992 [exp] 1203 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10014531 [exp] 1059 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10030539 [exp] 962 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 955 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10018324 [exp] 659 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10038361 [exp] 642 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10013304 [exp] 633 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10036221 [exp] 627 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.008G147400.1 pacid=42805867 polypeptide=Potri.008G147400.1.p locus=Potri.008G147400 ID=Potri.008G147400.1.v4.1 annot-version=v4.1 ATGGATCTGGAAACTGGGATTTCTCAAAACCATGTTAAGAGAGAATCATGGAAGACAGTATTAACTTTGGCATATCAAAGTCTAGGAGTTGTGTATGGAG ATTTAAGTACTTCGCCGCTATATGTATACAAGAGCACGTTTGCTGACGATATTCAACATTCTGAGACAAATGAAGAGATTTATGGTGTCCTGTCTTTTGT TTTTTGGACTCTCACTTTGATCCCTTTGTTAAAATACGTGTTTATAGTGCTAAAAGCTGATGATAATGGCGAAGGAGGTACTTTTGCTCTCTACTCCTTG CTCTGTCGGCATGCCCGAGTCAACTCACTCCCCAATTGCCAGGTGGCTGATGAAGAGCTTTACGAGTACAAGAAGGATGCTGCAGCTACTTGTTTGACAC CAAAAACTACTTTTGGTTCAAGATTGAAATCTACTCTTGAGAAACACAGGGTTTTGCAGAGGTTCTTACTTTTGCTGGCTTTGATTGGGACTTGTATGGT CATTGGTGATGGTGTCCTAACCCCTGCTCTTTCTGTTTTCTCCGCGGTTTCTGGCCTTGAGCTTTCCATGTCAAGAGAGCATCACAAATATGTGGAAGTT CCAGTTGCATGCATCATACTCATTGGCTTGTTTGCCCTTCAGCATTATGGCACCCACAGGATTGGATTCTTGTTTGCACCGGTGGTTCTAATGTGGCTTC TGTGCATCAGTGCCATTGGGATATATAATATCATACACTGGAATCCTCATGTTTATCAAGCTCTATCACCTTATTACATGTACAAGTTTTTGAGGAAAAC TCAACGAGGAGGTTGGATGTCCTTGGGCGGGATTTTGTTGTGTATAACAGGCTCAGAAGCTATGTTCGCTGATCTTGGACACTTTTCTCAATTGTCAATC CAGATAGCTTTCACCTCCTTGGTTTATCCATCCTTGATTCTTGCATATATGGGACAAGCTGCTTACCTATCTCAACATCATGCCATTGATAGTGATTACC GCATTGGATTTTACGTATCTGTTCCGGATAAATTACGATGGCCAGTTTTAGTTATAGCCATCCTTGCTGCAGTAGTTGGAAGCCAAGCCATCATCACTGG AACATTCTCAATAATCAAACAGTGCTCTGCTCTGAGCTGCTTCCCTAGAGTCAAAATAGTTCACACATCATCCAAAATTCATGGTCAGATCTACATCCCA GAGATAAACTGGACTTTGATGCTGCTGTGCTTGGCTGTTACTGTTGGTTTCAGGGACACAAAACGTATGGGTAATGCCTCAGGTTTGGCCGTTATAACCG TCATGCTGGTTACTACATGCCTGATGTCTCTAGTTATCGTCTTATGCTGGCACAAGAATGTCTTCTTTGCAATATGCTTTGTGTGCTTTTTTGGCACAAT TGAAGCTCTTTACTTCTCAGCTTCTCTAATAAAGTTCTTGGAAGGGGCCTGGGTTCCTGTTGCCCTCTCATTCATCTTCCTGATCGTTATGTGTGTGTGG CACTATGGCACACTCAAAACATACGAATTTGATGTCCAAAACAAGGTCTCCATTAATTGGCTACTTAGCTTGGGTCCTAGCCTTGGTATTGTGCGTGTCC GAGGAATTGGCCTCATACACACGGAGCTAGTTTCTGGAATCCCGGCAATCTTCTCCCACTTTGTTACCAACCTTCCAGCGTTCCACCAAGTCCTAGTCTT TCTCTGCATCAAATCTGTCCCTGTTCCACATGTTAGAGCCAAGGAACGGTTTCTAATAGGGTACATTGGCACAAGAGAATACAGGTTGTATAGGTGCATC GTGCGATATGGATATCGTGATGTTCACAAGGATGACATGGAGTTTGAGAAGGATCTTGTATGCAGCATAGCAGAGTTTATACGCTCAGGGAATCATGAAC CCAATGGTGCGAAGGATGACTTGGAGAGTGAAGATGGCAAAATGACAGTAGTTGGAACATGCTGTACTCATACAGATGGAATCCAATTGAGGGAGGATGA TGTTGACAACATAGAGTCAGCTGGCACCTCAGAGTTGAGGGAGATAAGGTCGCCACCTGTGATTCAACCTAGGAAAAGAGTAAGGTTTAGAGTACCAGAC AGCCCGAAGATCAACAGAGGTGCCAGGGAGGAGCTGCAGGAACTTGTGGAAGCTAGAGAAGCTGGGATTGCTTACATACTGGGGCATTCCTATGTGAGGG CCAAACAAGGATCTAGCATGCTGAAGAAGCTTGTAATAAATTATGGGTACGGGTTTTTGAGGCGAAACAGCAGGGCACCTGCCTCTACACTAAGTGCACC TCATGCATCTACTCTGCAGGTGGGGATGGTATACCATGTTTAA
AA sequence Show only first row Show all	>Potri.008G147400.1 pacid=42805867 polypeptide=Potri.008G147400.1.p locus=Potri.008G147400 ID=Potri.008G147400.1.v4.1 annot-version=v4.1 MDLETGISQNHVKRESWKTVLTLAYQSLGVVYGDLSTSPLYVYKSTFADDIQHSETNEEIYGVLSFVFWTLTLIPLLKYVFIVLKADDNGEGGTFALYSL LCRHARVNSLPNCQVADEELYEYKKDAAATCLTPKTTFGSRLKSTLEKHRVLQRFLLLLALIGTCMVIGDGVLTPALSVFSAVSGLELSMSREHHKYVEV PVACIILIGLFALQHYGTHRIGFLFAPVVLMWLLCISAIGIYNIIHWNPHVYQALSPYYMYKFLRKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSI QIAFTSLVYPSLILAYMGQAAYLSQHHAIDSDYRIGFYVSVPDKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALSCFPRVKIVHTSSKIHGQIYIP EINWTLMLLCLAVTVGFRDTKRMGNASGLAVITVMLVTTCLMSLVIVLCWHKNVFFAICFVCFFGTIEALYFSASLIKFLEGAWVPVALSFIFLIVMCVW HYGTLKTYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRAKERFLIGYIGTREYRLYRCI VRYGYRDVHKDDMEFEKDLVCSIAEFIRSGNHEPNGAKDDLESEDGKMTVVGTCCTHTDGIQLREDDVDNIESAGTSELREIRSPPVIQPRKRVRFRVPD SPKINRGAREELQELVEAREAGIAYILGHSYVRAKQGSSMLKKLVINYGYGFLRRNSRAPASTLSAPHASTLQVGMVYHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.008G147400 [exp]	0	1	Pt-KUP6.1
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.001G151700 [exp]	3.87	0.8257
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.003G115500 [exp]	6.00	0.7841
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	10.24	0.8168
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	12.40	0.8178	TGA3.1
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	18.00	0.8067
					Potri.003G139000 [exp]	20.66	0.7988
AT5G58950			Protein kinase superfamily pro...		Potri.005G082200 [exp]	24.55	0.7971	Pt-PK1.1
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	29.59	0.8154
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	31.24	0.7863
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	33.46	0.8102

Compare expression of checked genes

Potri.008G147400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.