Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23230 81 / 2e-20 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT3G23220 65 / 4e-14 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT5G43410 65 / 5e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G06160 67 / 7e-14 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT5G47230 67 / 7e-14 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G51190 66 / 7e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17490 66 / 2e-13 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G61600 64 / 5e-13 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G47220 64 / 1e-12 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 64 / 1e-12 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072400 [exp] 94 / 5e-25 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.002G039200 [exp] 77 / 1e-18 AT3G23230 113 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.005G223100 [exp] 74 / 1e-17 AT3G23230 101 / 2e-28 Integrase-type DNA-binding superfamily protein (.1) Potri.010G072600 [exp] 70 / 5e-16 AT3G23220 91 / 4e-24 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 71 / 2e-15 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.002G039300 [exp] 69 / 3e-15 AT3G23220 82 / 2e-20 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 69 / 4e-15 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.011G061700 [exp] 68 / 8e-15 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.003G150800 [exp] 69 / 2e-14 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021873 [exp] 81 / 7e-20 AT3G23230 143 / 4e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10011830 [exp] 75 / 1e-17 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10022936 [exp] 69 / 8e-16 AT3G23230 114 / 9e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10004752 [exp] 72 / 9e-16 AT5G07580 122 / 4e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10007841 [exp] 71 / 1e-15 AT5G47230 121 / 4e-33 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10024883 [exp] 70 / 1e-15 AT3G23230 130 / 3e-39 Integrase-type DNA-binding superfamily protein (.1) Lus10033884 [exp] 67 / 8e-15 AT3G23230 125 / 9e-38 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 69 / 2e-14 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 68 / 3e-14 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10011831 [exp] 66 / 3e-14 AT3G23230 132 / 2e-40 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.008G166100.1 pacid=42806683 polypeptide=Potri.008G166100.1.p locus=Potri.008G166100 ID=Potri.008G166100.1.v4.1 annot-version=v4.1 ATGGAAGAGCCTCATAAAGGGAAGGGAAATGAGGAGAAAGGGAGAGGAGAGGTTCGATACCGGGGTGTTCGAAGGAGACCTTGGGGAAAATTTGCAGCGG AGATACGAGACCCATCAAGGCAAGGAGGAAGGTTATGGCTAGGGACATTTGATACGGCAGAAGAGGCAGCTCGTGCTTATGATAAAGCTGCATTTAACTT GAGACGTCATCTTGCAATCCTCAACTTTCCTAGTGAATATATCTCTCAAGTGACGGAGTTTTCTCCTCGTCCTCGATCATTTTCAGCATCTAGCAGTAAT GTTGGTGCATCTGAGAGTTTTGAGAGGGGAAGCTCATCAAGTACCGGACAAGGAAAGCAAGTTATCGAGTTTGAGTACTTGGATGATAAGATTTTGGAGG AGCTTCTTGAAACAGAAGAGGAGAAGAAGAAGCGGCGGCAAGATTGA
AA sequence Show only first row Show all	>Potri.008G166100.1 pacid=42806683 polypeptide=Potri.008G166100.1.p locus=Potri.008G166100 ID=Potri.008G166100.1.v4.1 annot-version=v4.1 MEEPHKGKGNEEKGRGEVRYRGVRRRPWGKFAAEIRDPSRQGGRLWLGTFDTAEEAARAYDKAAFNLRRHLAILNFPSEYISQVTEFSPRPRSFSASSSN VGASESFERGSSSSTGQGKQVIEFEYLDDKILEELLETEEEKKKRRQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166100 [exp]	0	1
AT3G21670			Major facilitator superfamily ...		Potri.002G225500 [exp]	1.73	0.9270
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.001G083900 [exp]	3.74	0.9257
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.001G032900 [exp]	10.39	0.8229
AT2G30540			Thioredoxin superfamily protei...		Potri.002G208400 [exp]	12.60	0.8872	PtrGrx9
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Potri.004G046700 [exp]	13.49	0.8332
					Potri.012G086200 [exp]	14.49	0.8683
AT1G70840		MLP31	MLP-like protein 31 (.1)		Potri.017G051100 [exp]	18.33	0.8668	Pt-MSG.2
AT3G49950	GRAS		GRAS family transcription fact...		Potri.005G145600 [exp]	19.28	0.7934
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.005G228000 [exp]	19.59	0.8847
AT1G05990		RHS1 ,RHS2	ROOT HAIR SPECIFIC 1, EF hand ...		Potri.008G079132 [exp]	22.80	0.8622

Compare expression of checked genes

Potri.008G166100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.