Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76340 539 / 0 GONST3 golgi nucleotide sugar transporter 3 (.1) AT5G19980 271 / 1e-88 GONST4 golgi nucleotide sugar transporter 4 (.1) AT2G13650 55 / 3e-08 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT4G09810 46 / 3e-05 Nucleotide-sugar transporter family protein (.1) AT1G21070 43 / 0.0003 Nucleotide-sugar transporter family protein (.1) AT1G76670 43 / 0.0003 Nucleotide-sugar transporter family protein (.1) AT1G34020 42 / 0.0005 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057600 [exp] 659 / 0 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.018G071700 [exp] 293 / 2e-97 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.005G062900 [exp] 56 / 2e-08 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.007G106400 [exp] 53 / 1e-07 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G260300 [exp] 47 / 1e-05 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G044000 [exp] 45 / 5e-05 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.005G196500 [exp] 42 / 0.0005 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037000 [exp] 575 / 0 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10034672 [exp] 482 / 2e-171 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 462 / 6e-164 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 437 / 3e-154 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10017141 [exp] 301 / 1e-100 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 301 / 2e-100 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 300 / 3e-100 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 298 / 4e-99 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10024126 [exp] 56 / 3e-08 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 47 / 1e-05 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.008G177700.1 pacid=42807825 polypeptide=Potri.008G177700.1.p locus=Potri.008G177700 ID=Potri.008G177700.1.v4.1 annot-version=v4.1 ATGTCCGGTGAGTTGGAGAATCCTAAAGATGGTGGAGAGGAACAGAGAGGTACTGGAGCCTCCTCCTCTGCGGATGAAATCAAGGAAACCTGGTATAGTG GCTTACTCAAACTAACGTCCATTTATGGCGTAGCTGCTGGATATTGCATCTCAGCATCCCTGCTCTCCATTATCAACAAGTGGGCAGTCATGAAATTCCC TTACCCTGGGGCACTAACGGCATTACAGTATTTCACTAGCGCCGCAGGTGTACTCGTTTGTGGGTGGTTCAGGGTTGTAGAGCATGACTCGCTTGACCTG TTGACAATGTGGCGGTTCCTACCTGCGGCTGTTATGTTCTATCTGTCACTCTTTACCAACAGTGAGCTCTTACTCCATGCTAATGTGGATACATTCATTG TCTTCCGCTCGATAGTCCCCATCTTTGTTGCAATAGGAGAGACCTTGTTCCTACACCAGCCGTGGCCATCATTGAAGACATGGTTGTCACTTGCCACCAT CTTTGGTGGAAGTGTGCTATATGTGTTAACAGATTACCAGTTCACGGTCATGGCTTATAGTTGGGCTGTAGCTTACTTGGTAAGCATGACTATAGATTTT GTCTATATCAAGCATGTTGTCATGACCATTGGTTTAAATACTTGGGGTCTCGTGTTGTACAACAATCTCGAGGCCCTCCTACTCTTTCCCCTGGAATTGC TCATAATGGGGGAGCTTAAGAAAATAAAGCATGAAATTTCAGATGAGTCGGATTGGCACTCTTTTGGGGTGGTTTTGCCAGTTGGTTTATCTTGTTTGTT TGGTTTAGCCATCTCTTTCTTTGGGTTTTCTTGCCGGAGAGCAATCTCTGCTACAGGGTATACTGTTCTTGGTGTGGTGAACAAGTTGTTGACGGTTGTA ATCAATCTGGTTGTTTGGGACAAGCATTCAACATTCATTGGGACAGTGGGTCTTCTTATTTGTATGCTAGGTGGCATTATGTATCAACAGTCCACAAGCA AGCCCAAGGCTGTGCCTGAAGTAAAAGCAGAGCAAACTGATGAAGAACAACAGAAGCTACTAGAAATGCAAAGCAACAATAATGAGAAGGAAGTTACTCA GTCACATCAGGGTAAATGA
AA sequence Show only first row Show all	>Potri.008G177700.1 pacid=42807825 polypeptide=Potri.008G177700.1.p locus=Potri.008G177700 ID=Potri.008G177700.1.v4.1 annot-version=v4.1 MSGELENPKDGGEEQRGTGASSSADEIKETWYSGLLKLTSIYGVAAGYCISASLLSIINKWAVMKFPYPGALTALQYFTSAAGVLVCGWFRVVEHDSLDL LTMWRFLPAAVMFYLSLFTNSELLLHANVDTFIVFRSIVPIFVAIGETLFLHQPWPSLKTWLSLATIFGGSVLYVLTDYQFTVMAYSWAVAYLVSMTIDF VYIKHVVMTIGLNTWGLVLYNNLEALLLFPLELLIMGELKKIKHEISDESDWHSFGVVLPVGLSCLFGLAISFFGFSCRRAISATGYTVLGVVNKLLTVV INLVVWDKHSTFIGTVGLLICMLGGIMYQQSTSKPKAVPEVKAEQTDEEQQKLLEMQSNNNEKEVTQSHQGK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Potri.008G177700 [exp]	0	1
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	3.46	0.6445
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	9.00	0.6466
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.007G025200 [exp]	12.00	0.6515
AT5G05800			unknown protein		Potri.006G116400 [exp]	19.36	0.6225
AT5G02090			unknown protein		Potri.006G090100 [exp]	20.97	0.6304
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	36.60	0.6394
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	37.33	0.6065
AT1G80610			unknown protein		Potri.001G313900 [exp]	54.19	0.5715
AT2G46140			Late embryogenesis abundant pr...		Potri.014G090800 [exp]	77.84	0.6099	PM22.1
					Potri.006G138450 [exp]	78.26	0.5895

Compare expression of checked genes

Potri.008G177700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.