Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24400 654 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 642 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G67640 637 / 0 Transmembrane amino acid transporter family protein (.1) AT1G48640 604 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 515 / 0 Transmembrane amino acid transporter family protein (.1) AT3G01760 502 / 1e-176 Transmembrane amino acid transporter family protein (.1) AT1G25530 486 / 8e-171 Transmembrane amino acid transporter family protein (.1) AT1G71680 471 / 6e-165 Transmembrane amino acid transporter family protein (.1) AT1G47670 271 / 8e-86 Transmembrane amino acid transporter family protein (.1) AT4G35180 191 / 2e-55 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G055800 [exp] 737 / 0 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 664 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 659 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 608 / 0 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G118000 [exp] 515 / 0 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G128300 [exp] 510 / 3e-180 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 278 / 2e-88 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 260 / 2e-81 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 237 / 2e-72 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041581 [exp] 656 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 655 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 633 / 0 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 631 / 0 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 560 / 0 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10008263 [exp] 491 / 2e-171 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10041482 [exp] 480 / 5e-168 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032074 [exp] 478 / 5e-168 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10034283 [exp] 402 / 3e-139 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 340 / 3e-114 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.008G179000.1 pacid=42806292 polypeptide=Potri.008G179000.1.p locus=Potri.008G179000 ID=Potri.008G179000.1.v4.1 annot-version=v4.1 ATGGCTTACAACGAGTCACGGAATGATGCAGCAGCAAAAGAGAAGGCCATAGATGATTGGCTTCCAATCACTTCCTCTAGGAAAGCCAAATGGTGGTACT CAACCTTCCACAATGTTACTGCCATGGTTGGTGCTGGTGTCCTTAGCCTCCCCTATGCCATGGCTCAACTTGGATGGGGACCAGGAATCGCCATACTTGT TTTGTCATGGGTGATCACGTTGTACACTCTGTGGCAAATGGTCGAAATGCATGAGATGGTGCCTGGCAAGCGATTTGACAGGTACCATGAGCTAGGGCAA CATGTGTTTGGAGACAAGCTGGGTCTCTGGATTGTTGTGCCACAGCAACTAATTGTTCAAGTTGGAGTAAATATTGTCTACATGGTTACTGGAGGAAAAT CATTGAAGAAGTTCCATGATGTGGTTTGCCCCAACTGCAAAGACATCAGGCTAACATACTTCATCATGATTTTCGCCTCAGTTCAGATGGTACTGGCTCA TCTTCCCAATCTCAACTCCATTAGTGTAATCTCGCTGGCTGCAGCAGTCATGTCCTTAAGTTACTCTACAATTGCTTGGGCTGTCACGCTTAACAAGGGG GTTCAGCCTGATGTCGACTACAGCTACAAAGCAAGAACTAGAACAGGAGCTTTCTTTGACTTTATCACTGCCTTGGGTGATGTAGCTTTTGCATATGCTG GTCACAATGTGGTCTTGGAGATTCAAGCAACAATCCCTTCTTCTCCAGAGAAGCCTTCCAAGAAACCCATGTGGAGAGGAGCTTTCCTTGCATATCTCGT CGTCGCCTTCTGCTACTTCCCAGTTGCCTTGATTGGATACTGGTGTTATGGCAACAGCGTGGACGACAACATTCTAATCTCACTGCAGAAACCATCTTGG CTTATTGCAGCTGCTAACATGTTTGTTGTCATTCATGTTATTGGAAGCTACCAGATATATGCAATTGCAGTGTTCGACTTGCTGGAAACTGCATTGGTGA AGAAACTCCACTTTTCTCCTTCTTTCATGCTTCGCTTTGTTACTCGCACGGTATATGTTGGGCTCACAATGTTTGTTGGTATATGTATTCCATTCTTCAA TGGCCTGCTTTCTTTCTTCGGAGGATTTGCTTTTGCCCCAACAACATACTTTCTCCCCTGCGTCATGTGGCTTTCCATCTACAAACCGAAGAGGTTCGGC TTCTCTTGGACAGCAAATTGGGTCTGCGTTATACTTGGCGTTCTCTTGATGATACTGTCACCCATTGGTGCCCTAAGGCATATCATCCTTACAGCCAAGG ACTACGAATTCTTCTCATGA
AA sequence Show only first row Show all	>Potri.008G179000.1 pacid=42806292 polypeptide=Potri.008G179000.1.p locus=Potri.008G179000 ID=Potri.008G179000.1.v4.1 annot-version=v4.1 MAYNESRNDAAAKEKAIDDWLPITSSRKAKWWYSTFHNVTAMVGAGVLSLPYAMAQLGWGPGIAILVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQ HVFGDKLGLWIVVPQQLIVQVGVNIVYMVTGGKSLKKFHDVVCPNCKDIRLTYFIMIFASVQMVLAHLPNLNSISVISLAAAVMSLSYSTIAWAVTLNKG VQPDVDYSYKARTRTGAFFDFITALGDVAFAYAGHNVVLEIQATIPSSPEKPSKKPMWRGAFLAYLVVAFCYFPVALIGYWCYGNSVDDNILISLQKPSW LIAAANMFVVIHVIGSYQIYAIAVFDLLETALVKKLHFSPSFMLRFVTRTVYVGLTMFVGICIPFFNGLLSFFGGFAFAPTTYFLPCVMWLSIYKPKRFG FSWTANWVCVILGVLLMILSPIGALRHIILTAKDYEFFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24400		ATLHT2, AATL2, ...	ARABIDOPSIS LYSINE HISTIDINE T...		Potri.008G179000 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.001G256600 [exp]	1.41	0.9904
AT3G56180			Protein of unknown function (D...		Potri.008G075100 [exp]	1.73	0.9881
AT5G53540			P-loop containing nucleoside t...		Potri.012G022985 [exp]	3.46	0.9722
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.013G012666 [exp]	4.89	0.9558
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.006G001600 [exp]	5.19	0.9141
AT3G19080			SWIB complex BAF60b domain-con...		Potri.007G039350 [exp]	10.95	0.8792
AT4G02550			unknown protein		Potri.011G088750 [exp]	15.39	0.7169
					Potri.013G012733 [exp]	18.33	0.8056
AT3G21690			MATE efflux family protein (.1...		Potri.014G153100 [exp]	19.74	0.8683
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Potri.002G244200 [exp]	21.44	0.8315	Pt-XTH2.1

Compare expression of checked genes

Potri.008G179000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.