Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67710 384 / 4e-127 GARP ARR11 response regulator 11 (.1) AT4G16110 276 / 4e-84 GARP ARR2 response regulator 2 (.1) AT3G16857 271 / 5e-82 GARP ARR1 response regulator 1 (.1.2) AT2G01760 254 / 1e-78 GARP ARR14 response regulator 14 (.1) AT2G25180 252 / 1e-75 GARP ARR12 response regulator 12 (.1) AT4G31920 230 / 8e-68 GARP ARR10 response regulator 10 (.1) AT5G58080 208 / 3e-59 GARP ARR18 response regulator 18 (.1) AT5G49240 161 / 5e-45 GARP APRR4 pseudo-response regulator 4 (.1) AT5G07210 125 / 3e-30 GARP ARR21 response regulator 21 (.1) AT2G27070 125 / 4e-30 GARP ARR13 response regulator 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053100 [exp] 853 / 0 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G135500 [exp] 304 / 1e-94 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 297 / 4e-92 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G213500 [exp] 296 / 2e-91 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G001000 [exp] 287 / 3e-88 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.006G188000 [exp] 256 / 2e-76 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 251 / 2e-74 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G262100 [exp] 243 / 1e-71 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 230 / 1e-66 AT2G25180 364 / 2e-117 response regulator 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011389 [exp] 450 / 6e-155 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10006446 [exp] 426 / 1e-144 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10016846 [exp] 291 / 3e-89 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 287 / 8e-88 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 263 / 5e-79 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 261 / 2e-78 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10019058 [exp] 242 / 3e-72 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 228 / 7e-67 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 186 / 2e-52 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 152 / 2e-39 AT4G16110 169 / 4e-45 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G181000.7 pacid=42808628 polypeptide=Potri.008G181000.7.p locus=Potri.008G181000 ID=Potri.008G181000.7.v4.1 annot-version=v4.1 ATGATGGAAAATAATGGTTTCTCTTCTCCGCGAAATGATTCGTTTCCTGCTGGTCTCCGTGTTCTCGTTGTCGATGATGATCCCACCTGGTTAAAAATCC TCGAAAAGATGCTCAAGAAATGCTCTTATGAAGTGACCACATGCGGTTTGGCAAGAGATGCTTTGAACCTGCTTCGTGAGAGGAAAGGAGGATATGACAT TGTAATTAGTGACGTCTACATGCCTGACATGGATGGTTTCAAACTCTTAGAGCAAGTTGGACTGGAGATGGATCTTCCAGTCATTATGATGTCTGTTGAT GGAGAGACAAGCAGGGTGATGAAAGGCGTTCAACATGGAGCATGTGATTATCTTCTTAAGCCTATACGAATGAAAGAACTCCGGAATATATGGCAGCATG TATTCAGAAAGAAAATACATGAGGTAAGAGACATTGAAACTCTTGAACGGGTCGAAAGTTTTCAAATGACTAGAAATGGATCAGATCAATATGAGGATGG GCATGTGCTCTGTGGAGAAGATCTTACTTCCATAAAGAAAAGAAAACATATTGAAAGCAAGCATGATGAAAAAGACACTGGTGATAGTATTTCTACAAAG AAAGCTAGAGTAGTTTGGTCAGTAGATCTTCACCAGAAATTTGTCAAAGCCGTAAATCAGATAGGATTTGATACCACATCTTTGCCATCCTTCGACGGAG CAATGACAGGTAGTGTCTGTTTGGCAGAAGTTGGTCCCAAGAAAATACTTGACATGATGAACGTGCCATGGCTAACAAGAGAAAACGTTGCTAGCCACTT GCAGAAATACCGTCTCTATTTGAGTAGGTTGCAGAAAGAAAACGATTTTAAAAATCCTGCTGGTGGGATAAAGCAGTCAGATTCACCTTTAAGAGATTCT GCAGGAAGTTTTGGCTCTCAGAACTCCATCAACTTGCAGCACAATGATGTTTCGAATGGGAGCTACAGATTTTCTGGTAGTAGCTTAGTTGTCCACAATG GGGATCCCAGAAGCCATGACAGTGATCGAAAGAGACTTGTTTCAACGCCTGTGGAAGAACCCAAAAGAACCTTAACTGTTAATGTTCCCAATCCTTGTAT ACCCAGAAGTTCACAAATGGAATTTGGTCATCCCCTTGCACCTCCACAATCAGAAGTAGACTTTGGAGCATTGGATTCTACTTTCCCAACAAAGTATCCT TGGTGTGGAATTCCAGAGATTCAACTAAAAAAAGAACATAATCCACTTCATTTGAATGATGAATTCAGCCACCTTCCACTGCCTGGTCAAAAGCAGCTTA CCCAAGCTGATTATCCACAACCTGCTCCAGCCATCAGTTCTGCACCATCCTTAACACCTTCTCATAACGAGTACAGGAGCAATGTTAACCATGCAAGTTC AACAGCTATTGCGGTTGACTCTAGCCCTATTCAAACAAAGACCAATGTGGCAAATCATCAAGCTATTGAGCTCATTTCCAAGAGCACACCAAGTTTGGAA AATCAAGGCTTCAATATGAATTCCATTACAGAATTTGAATCTTCCCGGAAAAACATAAATTTGGGAATGCTACCTTTCACAACTTTGGAGGAAGACTTGC AAGTATGTTGGGTTCCAGGTGATTGCTATATGAATCTCGGACTCCAGAACATAGAGGTTCTGGAATACTTCGACCCAGGTCTTATCACAGACGTACCGGT AAACTTGAATGATGGGCTGAGGTTTGACTATGAGTTCAATGACCCAACAGAATATTCTCTAATAGATCAAAGCTTGTTTATAGCATGA
AA sequence Show only first row Show all	>Potri.008G181000.7 pacid=42808628 polypeptide=Potri.008G181000.7.p locus=Potri.008G181000 ID=Potri.008G181000.7.v4.1 annot-version=v4.1 MMENNGFSSPRNDSFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLARDALNLLRERKGGYDIVISDVYMPDMDGFKLLEQVGLEMDLPVIMMSVD GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIETLERVESFQMTRNGSDQYEDGHVLCGEDLTSIKKRKHIESKHDEKDTGDSISTK KARVVWSVDLHQKFVKAVNQIGFDTTSLPSFDGAMTGSVCLAEVGPKKILDMMNVPWLTRENVASHLQKYRLYLSRLQKENDFKNPAGGIKQSDSPLRDS AGSFGSQNSINLQHNDVSNGSYRFSGSSLVVHNGDPRSHDSDRKRLVSTPVEEPKRTLTVNVPNPCIPRSSQMEFGHPLAPPQSEVDFGALDSTFPTKYP WCGIPEIQLKKEHNPLHLNDEFSHLPLPGQKQLTQADYPQPAPAISSAPSLTPSHNEYRSNVNHASSTAIAVDSSPIQTKTNVANHQAIELISKSTPSLE NQGFNMNSITEFESSRKNINLGMLPFTTLEEDLQVCWVPGDCYMNLGLQNIEVLEYFDPGLITDVPVNLNDGLRFDYEFNDPTEYSLIDQSLFIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.008G181000 [exp]	0	1
AT1G78020			Protein of unknown function (D...		Potri.005G078600 [exp]	1.00	0.8362
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	1.73	0.8275
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.001G019000 [exp]	2.44	0.8319
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.018G130300 [exp]	2.82	0.7780
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	6.92	0.8036	Pt-APL3.2
AT2G40160		TBL30	Plant protein of unknown funct...		Potri.008G070101 [exp]	8.12	0.7898
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.008G039000 [exp]	8.36	0.7735
					Potri.009G051100 [exp]	10.24	0.7921
AT5G38210			Protein kinase family protein ...		Potri.004G096550 [exp]	10.95	0.7661
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Potri.008G097200 [exp]	13.41	0.7175

Compare expression of checked genes

Potri.008G181000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.