Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FRGA-A30.20
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 392 / 8e-121 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 382 / 2e-114 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G07040 237 / 2e-65 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 235 / 3e-65 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G53350 235 / 1e-64 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 229 / 1e-62 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 228 / 2e-62 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 224 / 2e-61 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 209 / 5e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 201 / 1e-53 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121876 [exp] 669 / 0 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 651 / 0 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123500 [exp] 646 / 0 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 638 / 0 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 631 / 0 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 620 / 0 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 610 / 0 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 606 / 0 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 593 / 0 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022792 [exp] 482 / 2e-155 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 472 / 1e-151 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 472 / 2e-151 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 468 / 8e-151 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 468 / 9e-151 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 473 / 5e-148 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 452 / 2e-142 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 447 / 3e-142 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 439 / 2e-135 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 426 / 1e-131 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G212200.1 pacid=42807725 polypeptide=Potri.008G212200.1.p locus=Potri.008G212200 ID=Potri.008G212200.1.v4.1 annot-version=v4.1 ATGGCTGATGCTCTTGTATCAAAGGTCTTGCAGCAGCTAACTTCAGCCATTGAAAATGAGTCAGCATTAATCCTTGGAGGGAAAAAGAAGGTTGAAAAGC TTACTACAACCCTCACTGCTATCAGATCTGTGCTCATTGATGCTGAGAAAAAGCAAGTGAAAGAAAAGAGGGTGCGGGTTTGGTTAGAACAGCTTGAGGC CATATCTTATGACTTGGATGACTTGCTAGATGAATGGAACACCAAGATCTGTGAACCCAAAAGAATTGAGATAATGGGCCATCATCATTCCTCCCTTTCC AAGAAGATGGTACGTCTCTCCAAGTTTATTTCTCCATGTTTTTGTGTCAATCAACTTGTTATGCATCGTGATATTGGTAGCAAGATGGAATGTATTAAAG AAAGACTAGATGAGGTTGCAAATGAGAAAGACAAGTACCATTTTGATATTGACGGCAAGACGGAAGAAGCAGATCGACAGGAGACTACACCTCTAATTGA TGTTTCAGAGGTATGTGGTCGGGACTTCGATAAAGATACTATAATAAGTAAGCTGTGTGAAGAATTCGAAGAAGAGAACTGCCCTCTTATTATCTCCATA GCTGGGATGGGAGGCATGGGAAAGACAACCCTTGCTCAGTTGGTGTTCAGTGATGATAAAGTGACTGCTCATTTCGAGCACAGAATCTGGGTGTGTGTTT CCGAGCCTTTTGATAGGATCCGGATTGCAAAAACGATCATTAATGCTTTTGATGAACTCCATACGTACATATTGTGGCAACATTTGCAAGAACATCTGCG CAAGTCTGTCATGGGAAAGAAGTTCCTTCTTGTGCTGGATGATGTATGGACTAATGACTTCAGGATATGGGAACCAATAAAGGTACCCCTTAAATCTGGA GCCCCAGGGAGTAGAATTTTAGTGACTACAAGGAATGAGGGAGTTTCAAAAATGATGGATGCTGCTTACATGCTCCCTCTAGGTAAATTGTCTCCTGAGG ATTCTTGGTCATTGTTTAGTAAATTTGCTTTCTACGGAAAGAGCAGAGAGGATCGTGATAATTTAGAAGAAATTGGTAGAGAAATTGCAGACAAATGCCA AGGTCTGCCTCTGGCTGTAAAGTCCTTGGGGAGTCTAATGCGCTTCAAGGAAACGAAACAAGCTTGGGAGAATGTCCTTCACAGTGAATTGTGGGAATCG GAAGAAGCTGAAAGGGGAATTTTTCCTCATCTGTTATTGAGTTATCATGACCTGTCACCCCCCATTAAACGGTGTTTTGCATTTTGTGCTATTTTCCCTA GAGATCATAAGATAGAGAGAGACACTTTGATACAGCTTTGGATGGCTCAGGGTTTCCTTGTTCCAACGGGAAGTGTTGAAATGGAGCAAATAGGTGCAGA GTATTTTGATAACTTAGTAATGCGGTCATTCTTTCAAGATTTGGAAAGAGACAGGGATGATTTCAGCATAGTTGCTTGCAGGATGCATGACATTGTGCAA AGCTTTGCCCAGTTTCTTTCAAAGAACCAATGCTTCGTTATCGAATTTGATGAGAAAAATGTGTTAGAGATGGCTTCTTTGCATACAAAAGCCCGTCACA TGACCTTAACGGGTAGAGAGAAACAGTTTCATCCCATCATTTTCAACCTGAAAAATCTGCGTACACTGCAGGTCCTGCAAAAGGATGTGAAGACAGCTCC TCCTGATCTATTTCATGGCTTGCAGTGCCTTAGGGGATTGGATTTGAGCCATACTTCAATTACCGGACTACCGAGTGCTGTTGGTAGACTTTTTCATTTA AGATGGTTAAATTTATCTGGCTTGAATTTTGTAGTGTTGCCTGATACTATCTGTAAGTTGTATAATTTGCTGGCCTTAAAACTTCATGGTTGTAGACGTC TTCATAGACTACCTAGAGGCCTTGGAAAGCTAATTAACCTGAGATATCTTAATATTGAAGAGACCGAAAGCCTTAGCGTATTGCCACAAGGAATTGGGAG ATTAAGTAACCTCGGCACTTTGAGCAAGTTTTGTATTGGTGAGAATAGGGAAGGATGTAATGTTGGAGAACTGAAAAACCTCAATCATCTCAGAGGGCAT CTGGAAATAAGTGGGCTAGAGAAGGTTAGAAATGTGAATGAAGTGATGGAGGCGAACTTGAAAAATAAGGAGCACCTAAGAAGTTTGGATCTAGCATTCT CGTTCGGAGGGCAAGAGCTGATCACAAATGTTCTTGAAGCTTTGCAACCACATCCTAACTTGGAAGCTTTACTTGTTTACGACTATGGTGGATCAATTTT GCCCAGCTGGATGACATTGCTTACAAAGATGAAAGATTTGAAACTCCTCAGATGTGTAAACTGCAAGGAGTTGCCTTCTTTAGGGAAACTCCCATCTCTA GAAAAACTTCTGATAGGACACTTCAACAATGTAAAATGCGTTAGTGTTGAGTTTCTTGGGATAGATCCTGTCACAGATCAAAATTCTATTACAGAATCAG TTGTTTTATTCCCAAAGTTGAAAGAGCTCACCTTTCGCTATATGGTGGAGTGGGAAAATTGGGATACAACAACAACAACCTCAGCTGCAACAAGGAGGAC AATGCCATGTCTGCGCTCATTATCACTCTATGATTGCCCCAAGCTTAAGGCAATACCAGAAGGCCTCAAGCAGAGGCCTCTGGAGGAATTGATCATCACC AGGTGCCCCATTTTGGAATAG
AA sequence Show only first row Show all	>Potri.008G212200.1 pacid=42807725 polypeptide=Potri.008G212200.1.p locus=Potri.008G212200 ID=Potri.008G212200.1.v4.1 annot-version=v4.1 MADALVSKVLQQLTSAIENESALILGGKKKVEKLTTTLTAIRSVLIDAEKKQVKEKRVRVWLEQLEAISYDLDDLLDEWNTKICEPKRIEIMGHHHSSLS KKMVRLSKFISPCFCVNQLVMHRDIGSKMECIKERLDEVANEKDKYHFDIDGKTEEADRQETTPLIDVSEVCGRDFDKDTIISKLCEEFEEENCPLIISI AGMGGMGKTTLAQLVFSDDKVTAHFEHRIWVCVSEPFDRIRIAKTIINAFDELHTYILWQHLQEHLRKSVMGKKFLLVLDDVWTNDFRIWEPIKVPLKSG APGSRILVTTRNEGVSKMMDAAYMLPLGKLSPEDSWSLFSKFAFYGKSREDRDNLEEIGREIADKCQGLPLAVKSLGSLMRFKETKQAWENVLHSELWES EEAERGIFPHLLLSYHDLSPPIKRCFAFCAIFPRDHKIERDTLIQLWMAQGFLVPTGSVEMEQIGAEYFDNLVMRSFFQDLERDRDDFSIVACRMHDIVQ SFAQFLSKNQCFVIEFDEKNVLEMASLHTKARHMTLTGREKQFHPIIFNLKNLRTLQVLQKDVKTAPPDLFHGLQCLRGLDLSHTSITGLPSAVGRLFHL RWLNLSGLNFVVLPDTICKLYNLLALKLHGCRRLHRLPRGLGKLINLRYLNIEETESLSVLPQGIGRLSNLGTLSKFCIGENREGCNVGELKNLNHLRGH LEISGLEKVRNVNEVMEANLKNKEHLRSLDLAFSFGGQELITNVLEALQPHPNLEALLVYDYGGSILPSWMTLLTKMKDLKLLRCVNCKELPSLGKLPSL EKLLIGHFNNVKCVSVEFLGIDPVTDQNSITESVVLFPKLKELTFRYMVEWENWDTTTTTSAATRRTMPCLRSLSLYDCPKLKAIPEGLKQRPLEELIIT RCPILE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.008G212200 [exp]	0	1	FRGA-A30.20
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Potri.002G009300 [exp]	5.19	0.8232
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.001G323100 [exp]	6.78	0.8507	FBL3,Pt-IPS1.2
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.007G074028 [exp]	8.66	0.8213
AT5G66600			Protein of unknown function, D...		Potri.005G130000 [exp]	10.58	0.8006
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	12.32	0.8414	Pt-BRI1.1
AT1G65295			unknown protein		Potri.019G053100 [exp]	12.72	0.8088
AT5G53880			unknown protein		Potri.011G117001 [exp]	23.06	0.7793
AT1G66890			unknown protein		Potri.004G097200 [exp]	23.36	0.7041
AT5G56040			Leucine-rich receptor-like pro...		Potri.011G164800 [exp]	24.16	0.8121
AT4G22290			Ubiquitin-specific protease fa...		Potri.004G002000 [exp]	26.15	0.8221

Compare expression of checked genes

Potri.008G212200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.