Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16110 602 / 0 GARP ARR2 response regulator 2 (.1) AT3G16857 570 / 0 GARP ARR1 response regulator 1 (.1.2) AT2G25180 306 / 3e-95 GARP ARR12 response regulator 12 (.1) AT2G01760 298 / 1e-94 GARP ARR14 response regulator 14 (.1) AT1G67710 280 / 6e-86 GARP ARR11 response regulator 11 (.1) AT4G31920 272 / 7e-83 GARP ARR10 response regulator 10 (.1) AT5G58080 253 / 6e-75 GARP ARR18 response regulator 18 (.1) AT5G49240 181 / 1e-51 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 154 / 2e-41 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT5G07210 144 / 4e-36 GARP ARR21 response regulator 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001000 [exp] 1140 / 0 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G105600 [exp] 371 / 3e-119 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G135500 [exp] 371 / 3e-119 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.018G111300 [exp] 329 / 9e-103 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 322 / 2e-100 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.010G053100 [exp] 306 / 8e-96 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.006G262100 [exp] 308 / 6e-95 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.008G181000 [exp] 294 / 9e-91 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.018G021300 [exp] 295 / 3e-90 AT2G25180 364 / 2e-117 response regulator 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037719 [exp] 876 / 0 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 858 / 0 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10041020 [exp] 314 / 1e-97 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10011389 [exp] 306 / 1e-97 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10005340 [exp] 314 / 2e-97 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10006446 [exp] 303 / 5e-96 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10019058 [exp] 262 / 5e-79 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 252 / 4e-75 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 200 / 4e-57 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 163 / 2e-42 AT4G16110 169 / 4e-45 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G213500.1 pacid=42807028 polypeptide=Potri.008G213500.1.p locus=Potri.008G213500 ID=Potri.008G213500.1.v4.1 annot-version=v4.1 ATGATGAATCTTGCTAACTGCAAAGGATCAATGTCAACGGCTACTTCTGGTGGCGTCTGGAAGGCCTCTGATGGTGCCTCAGATCAGTTTCCGGCAGGGT TGCGTGTGTTGGTTGTTGATGATGATCCAACATGCCTTGTGATCTTGGAGAAGATGCTTAGGACCTGCCGTTATGAAGTTACAAAGTGCAATCGAGCAGA GATCGCGTTGTCTTTACTTCGAGAGAACAAAAACGGGTATGATATTGTTATTAGTGATGTCCACATGCCAGACATGGATGGATTTAAACTTCTTGAGCAA ATTGGGCTGGAGATGGACCTGCCTGTTATCATGATGTCTGCTGATGATGGGAAAAATGTGGTGATGAAAGGTGTAACTCACGGTGCTTGTGATTACCTGA TTAAACCGATTCGCATTGAGGCACTGAAGAACATATGGCAGCATGTGGTTCGCAAGAGAAAGAATGAATGGAAGGATTTGGAGCAATCAGGGAGTGTCGA AGAGGGAGGAGACAGGCAGCAGAAACAACCTGAAGATGCTGATTACTCGTCCTCAGCAAATGAAGGAAGTTGGAAAAATTCAAAGAGGAGAAAAGATGAG GAAGAAGAAGCAGAGGAGAGGGATGATACATCCGCGTTAAAGAAACCACGTGTGGTTTGGTCAGTTGAACTTCATCAACAGTTTGTCGCAGCAGTTAATC AACTAGGCATTGACAAGGCTGTCCCCAAGAAAATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAATGTTGCTAGCCACCTTCAGAAATATCG CTTGTATCTTAGAAGGTTAAGTGGGGTTTCACAGCACCAGAACGGTATGGGCAGCTCTTTTATCAGCCCACAAGAGGCAACATATGGGCCATTGTCCTCC CTTAACGGGCTCGACCTTCAAACTCTTGCTACTGCTGGTCAACTCCCTGCACAAAGTCTCGCCACACTGCAAGCAGCCGGACTTGGTCGATCAACAGCAA AACCTAGAATGCCCATGCCAATTGTTGATCAGAGGAACCTCTTCAGCTTTGAAAATCCAAAATTAAGATTTGGGGAGGGGCAACAGCAACATTTGAACAA TGGTAAGCAAACGAACCTGCTTCATGGAATCCCAACCACCATGGAGCCAAAGCAGCTAGCAAACTTGCACCATTCAGCACAGTCTCTTGGGAGCATGAAT ATGCAATTCAATGCCCATGCAGGCCAGAGTAGTTCTTTGCTGATGCAGATGTCTCAACAGCAGTCTAGGGGTCAGATACTAAATGAAACTACCCACAGCC ATGTTCCCAGACTCTCATCATCCATAGGGCAGCCTATTGCATCTAATGCACTTGCCAGTGGGGTCTTGACAAGAAATGGATTAGCTGAAAATGGCAGAGG AATAGGATTCAATCCAGTTTCACAATCATCTACGTTGTTGAATTTCCCATTGAACACCACAGCTGAATTGACAGCCACTAGTTTTCCTCTTGGAAGTGCT GCTGAGGTGCCTAGTCTCACATCCAAGGGGACATTTCAGGAAGAGATCAGCTCAGAAATAAAGGGAACTGGAGGATTCATGCCAAGTTATGATATCTTTA GCGACTTGCAACAGCACAGATCCCATGATTGGGAGTTACAGAATGTAGGCATGACCTTCAATGGTTCTCAGCAATCCAATTCTGTGCAAAGCAACCTTGA CGTGGCACCATCAGTTTTATCTCATCAAGGCTTTTCTTCATGCCAAAGTAATGGACAAAGCAGGAATAATATATCTGTGGTAGGCAAGCCAATGTTTTCA GCAGGAGATGCGACGGAGCACGTGAATGCGCAAAGTCTTGAACATCCTATCAACACTTTTTTTGCTGAAAATTCCATGAGAGTTAAGACTGAAAGAGTCC CTGATGCAAACCCTCAAACTGCACTCTTTAATGGACAGTTTGGTCAGGAGGATCTCATGAGTGCACTTCTCAAACAACAGCAGCAGCAGCAGCAGGGAGG CATTGGACTAGCTGAAAATGAATTTGACTTCGATGGGTATTCCCTGGATAATATTCCTGTGTAG
AA sequence Show only first row Show all	>Potri.008G213500.1 pacid=42807028 polypeptide=Potri.008G213500.1.p locus=Potri.008G213500 ID=Potri.008G213500.1.v4.1 annot-version=v4.1 MMNLANCKGSMSTATSGGVWKASDGASDQFPAGLRVLVVDDDPTCLVILEKMLRTCRYEVTKCNRAEIALSLLRENKNGYDIVISDVHMPDMDGFKLLEQ IGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPIRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGGDRQQKQPEDADYSSSANEGSWKNSKRRKDE EEEAEERDDTSALKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNGMGSSFISPQEATYGPLSS LNGLDLQTLATAGQLPAQSLATLQAAGLGRSTAKPRMPMPIVDQRNLFSFENPKLRFGEGQQQHLNNGKQTNLLHGIPTTMEPKQLANLHHSAQSLGSMN MQFNAHAGQSSSLLMQMSQQQSRGQILNETTHSHVPRLSSSIGQPIASNALASGVLTRNGLAENGRGIGFNPVSQSSTLLNFPLNTTAELTATSFPLGSA AEVPSLTSKGTFQEEISSEIKGTGGFMPSYDIFSDLQQHRSHDWELQNVGMTFNGSQQSNSVQSNLDVAPSVLSHQGFSSCQSNGQSRNNISVVGKPMFS AGDATEHVNAQSLEHPINTFFAENSMRVKTERVPDANPQTALFNGQFGQEDLMSALLKQQQQQQQGGIGLAENEFDFDGYSLDNIPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.008G213500 [exp]	0	1
AT4G24630			DHHC-type zinc finger family p...		Potri.002G065500 [exp]	6.48	0.7255
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	9.00	0.7397	PtrCSLD1,CESA3.2
AT3G15115			unknown protein		Potri.001G372800 [exp]	9.32	0.6976
AT1G29690		CAD1	constitutively activated cell ...		Potri.004G064000 [exp]	9.53	0.7446
AT5G11070			unknown protein		Potri.006G259200 [exp]	9.89	0.7796
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	13.11	0.7723	Pt-ATCSLC12.1
AT3G06890			unknown protein		Potri.010G013100 [exp]	13.41	0.7394
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014370 [exp]	13.85	0.7439
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.002G098000 [exp]	16.06	0.6849
AT1G45688			unknown protein		Potri.014G026800 [exp]	16.43	0.7627

Compare expression of checked genes

Potri.008G213500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.