Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17430 569 / 0 Nucleotide-sugar transporter family protein (.1) AT1G48230 545 / 0 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G53660 296 / 1e-98 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G25400 288 / 3e-95 Nucleotide-sugar transporter family protein (.1) AT2G25520 286 / 1e-94 Drug/metabolite transporter superfamily protein (.1) AT4G32390 286 / 1e-94 Nucleotide-sugar transporter family protein (.1) AT5G11230 282 / 5e-93 Nucleotide-sugar transporter family protein (.1) AT3G14410 272 / 4e-89 Nucleotide/sugar transporter family protein (.1) AT1G21870 119 / 1e-30 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 114 / 5e-29 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001700 [exp] 628 / 0 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G394500 [exp] 292 / 7e-97 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.006G252500 [exp] 285 / 4e-94 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.018G028900 [exp] 283 / 2e-93 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 116 / 2e-29 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 110 / 4e-27 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.010G194100 [exp] 102 / 1e-24 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 99 / 4e-23 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 98 / 7e-23 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018339 [exp] 577 / 0 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10017115 [exp] 573 / 0 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 298 / 6e-99 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002023 [exp] 298 / 6e-99 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 269 / 1e-87 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10025645 [exp] 119 / 2e-30 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10042700 [exp] 112 / 8e-28 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10028255 [exp] 109 / 4e-27 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10029663 [exp] 109 / 5e-26 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10040234 [exp] 106 / 6e-26 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.008G214300.1 pacid=42806248 polypeptide=Potri.008G214300.1.p locus=Potri.008G214300 ID=Potri.008G214300.1.v4.1 annot-version=v4.1 ATGATTGTGAATAAGCCGTTGGTGTTGACTTATCTCTACCTTTTGATTTACATTTTGCTTTCGTCTGGAGTCATTTTGTACAACAAGTGGGTGCTCTCAC CAAAATATTTCGACTTTCCATTTCCCATTACACTTACGATGATTCATATGGGGTTTTCAGGGGCTGTAGCCTTTTTCCTTATTCGTGTATTTAAGGTTGT ATCTCCAGTCAAAATGACTTTGGAAATATACATAACCTGTGTTGTGCCAATAAGTGCCTTCTTTGCAGCAAGTCTTTGGTTTGGCAACACAGCTTACTTG TACATCTCAGTAGCCTTCATCCAGATGCTCAAAGCTCTAATGCCTGTGGCAACATTTATCATGGCTGTTATGTGTGGCACTGACAAAGCAAGGTGTGACG TGTTCTTAAACATGTTGCTCGTCAGTGTTGGAGTTGTCATCTCATCATATGGGGAAATTCATTTTAATGTAGTTGGCACACTTTACCAGGTCACGGGCAT CTTTGCAGAAGCTCTTAGGCTGGTTTTAACTCAAGTTCTTCTACAGAAGAAGGGCTTGACCCTAAATCCAATCACCAGCTTATATTACATAGCTCCATGC AGTTTTGTTTTTCTGTGTGCTCCTTGGTATGTACTGGAGAAGCCTGGGATGGAAGTTTCACAGATTCAGTTCAACTTTTGGATCTTCTTTTCCAATGCTC TTTGTGCGTTAGCCTTGAACTTCTCTATATTCTTAGTAATTGGTAGAACTGGGGCAGTCACCATCCGAGTTGCTGGTGTGCTAAAAGACTGGATACTCAT AGCCCTTTCCACCATCATATTCCCAGAGTCTACAATAACTGGGCTGAATATAATCGGTTATGCAATTGCACTTTGTGGTGTTGTTATGTACAACTACTTG AAGGTTAAGGATGTCCGTGCATCTCAGGTCCCTGAAAACATTTCGGATAGAATAGCAAAGGATTGGAAATTGGAGAAGTCATCTGATACATTCACACCTA ATAACAGCAGTGATAACAATGGAGGAGGTGGCGGGGGAAATATTTCTTCCTCTGATATGAATGTTGATGAAGAAGCACCTCTAATTCCATCATCAAGATT GTCGCACTTTGGTCGTACACAGCTTAGCAAGTAG
AA sequence Show only first row Show all	>Potri.008G214300.1 pacid=42806248 polypeptide=Potri.008G214300.1.p locus=Potri.008G214300 ID=Potri.008G214300.1.v4.1 annot-version=v4.1 MIVNKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFDFPFPITLTMIHMGFSGAVAFFLIRVFKVVSPVKMTLEIYITCVVPISAFFAASLWFGNTAYL YISVAFIQMLKALMPVATFIMAVMCGTDKARCDVFLNMLLVSVGVVISSYGEIHFNVVGTLYQVTGIFAEALRLVLTQVLLQKKGLTLNPITSLYYIAPC SFVFLCAPWYVLEKPGMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTIIFPESTITGLNIIGYAIALCGVVMYNYL KVKDVRASQVPENISDRIAKDWKLEKSSDTFTPNNSSDNNGGGGGGNISSSDMNVDEEAPLIPSSRLSHFGRTQLSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17430			Nucleotide-sugar transporter f...		Potri.008G214300 [exp]	0	1
AT4G35360			Uncharacterised conserved prot...		Potri.004G207700 [exp]	7.00	0.6855
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Potri.009G168200 [exp]	27.91	0.5907
AT4G02100			Heat shock protein DnaJ with t...		Potri.014G122300 [exp]	28.84	0.6226
AT2G41475			Embryo-specific protein 3, (AT...		Potri.018G131800 [exp]	30.98	0.6101
AT5G64480			unknown protein		Potri.009G080400 [exp]	33.09	0.6209
AT4G23490			Protein of unknown function (D...		Potri.001G100700 [exp]	34.72	0.6143
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.006G248400 [exp]	36.74	0.5462
AT5G48920		TED7	tracheary element differentiat...		Potri.005G060700 [exp]	55.85	0.5984
AT3G11210			SGNH hydrolase-type esterase s...		Potri.008G068000 [exp]	67.00	0.5555
					Potri.008G127651 [exp]	67.03	0.5377

Compare expression of checked genes

Potri.008G214300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.