Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18560 175 / 7e-52 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT5G13910 124 / 9e-34 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT1G28160 113 / 2e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G12890 110 / 1e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G24590 100 / 3e-24 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT1G12980 100 / 1e-23 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT3G61630 93 / 2e-21 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT5G13330 90 / 5e-21 AP2_ERF RAP2.6L related to AP2 6l (.1) AT1G03800 90 / 8e-21 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT1G28370 88 / 8e-21 AP2_ERF AtERF11 ERF domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077700 [exp] 125 / 2e-33 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.001G157100 [exp] 122 / 1e-32 AT5G13910 101 / 6e-26 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.003G161000 [exp] 120 / 1e-31 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.001G069300 [exp] 119 / 3e-31 AT1G28160 121 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.008G186300 [exp] 110 / 4e-27 AT1G24590 69 / 1e-12 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.010G046600 [exp] 110 / 6e-27 AT1G24590 71 / 2e-13 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.019G088000 [exp] 100 / 2e-25 AT1G12890 104 / 1e-28 Integrase-type DNA-binding superfamily protein (.1) Potri.005G219600 [exp] 98 / 2e-24 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.002G043300 [exp] 96 / 1e-23 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033963 [exp] 172 / 7e-51 AT5G18560 186 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Lus10035129 [exp] 129 / 2e-35 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10017907 [exp] 99 / 7e-24 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10035076 [exp] 99 / 2e-23 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10033664 [exp] 92 / 4e-22 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10039857 [exp] 91 / 4e-21 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10026053 [exp] 90 / 7e-21 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1) Lus10014345 [exp] 89 / 3e-20 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) Lus10031526 [exp] 87 / 7e-20 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10016212 [exp] 87 / 1e-19 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.008G215600.1 pacid=42807037 polypeptide=Potri.008G215600.1.p locus=Potri.008G215600 ID=Potri.008G215600.1.v4.1 annot-version=v4.1 ATGTCCACCTCCAAAACCTTCGATAAACCCTTGGAAGGATATGACACCCTTAACATCCATGCAGGCTTTGCTCTCCTTCAGAGAAACACGACCCCGCCTC AAACTGGTGAGAGGAGAGGCAGAAGAAAGCAAGCAGAACCAGGAAGGTTTCTTGGAGTCAGGAGGAGACCTTGGGGTAGATATGCCGCTGAGATTAGAGA CCCGACGACAAAAGAAAGGCACTGGCTTGGCACCTTTGATACTGCCCATGAAGCAGCTCTAGCTTATGATAGGGCTGCCCTTTCCATGAAGGGCACTCAA GCAAGAACCAACTTCAATTACTCTGATAACACAACCTTCCACTCACTTCTTACTCCATTTGACATTCAAGCCTTCTTGCCACAATCACAGTTCCTCACTA ACACTCAGATTAAACAACCAACCAACCAGAGCAGTCCTGTTAAGCTTGAAACTTGTCAGAATATGACCCCAAACCAATCAAGTAGCGATACATATGCTGA ATCTTCTGATGGATCAGCTCATGAAACTAACAGTTTCTTTTTCTCGAATGAAGATTCTAACTCGGGTTACTTGGGCTGCATTGTTCCTGATAACTGCTTG AGGCCACCACCCTCAAGCACCTCTAGTAAAACCACCAAATCCAATGCTTCAAATGATCAATACTCTTGCTCCATGACCGCAAGTACTTCCCTTGAAGATC ACTCCCAATGTAACAAGTACGCCCCTCCTCTCGAAATCACAAATGTGCCAACCAAGGCATATACTCCTGGAAACTTTCCTGGCTTTGATGAGCTCAACCA TGGATTTTGGGGGGACCAACTGTCATGGGATGGCAATTCCGGTGACCTCTCAGCAATGATGAACAACCCATTAATGGTGGAAAATGTATGCATGGATACC TTGTATAGCGTCGACAATCCTCCTACTTATGGCTTAATGCCCCAAGCTACTTCTTCAGTATCTAGCTCTTCGTTATCATATCCAGCTTATGGTGATGCAG TTAACTTTGGATATTCACTCTTTTGA
AA sequence Show only first row Show all	>Potri.008G215600.1 pacid=42807037 polypeptide=Potri.008G215600.1.p locus=Potri.008G215600 ID=Potri.008G215600.1.v4.1 annot-version=v4.1 MSTSKTFDKPLEGYDTLNIHAGFALLQRNTTPPQTGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMKGTQ ARTNFNYSDNTTFHSLLTPFDIQAFLPQSQFLTNTQIKQPTNQSSPVKLETCQNMTPNQSSSDTYAESSDGSAHETNSFFFSNEDSNSGYLGCIVPDNCL RPPPSSTSSKTTKSNASNDQYSCSMTASTSLEDHSQCNKYAPPLEITNVPTKAYTPGNFPGFDELNHGFWGDQLSWDGNSGDLSAMMNNPLMVENVCMDT LYSVDNPPTYGLMPQATSSVSSSSLSYPAYGDAVNFGYSLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Potri.008G215600 [exp]	0	1
AT1G75090			DNA glycosylase superfamily pr...		Potri.002G133800 [exp]	5.74	0.7675
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	30.98	0.7185
AT2G44500			O-fucosyltransferase family pr...		Potri.009G022500 [exp]	34.78	0.7435
AT3G21710			unknown protein		Potri.014G151900 [exp]	36.11	0.7466
AT3G46540			ENTH/VHS family protein (.1)		Potri.009G030500 [exp]	50.91	0.6903
AT2G25735			unknown protein		Potri.006G244200 [exp]	63.16	0.7052
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.014G101100 [exp]	71.33	0.6619
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.013G054100 [exp]	84.24	0.6493
AT5G25050			Major facilitator superfamily ...		Potri.006G266000 [exp]	90.04	0.7069
AT5G14360			Ubiquitin-like superfamily pro...		Potri.001G339100 [exp]	92.87	0.6885

Compare expression of checked genes

Potri.008G215600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.