Plant FIBer expression Database

Potri.008G216600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21430 1006 / 0 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
AT3G05380 315 / 4e-91 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
AT5G27610 283 / 8e-80 MYB ATALY1 ARABIDOPSIS THALIANA ALWAYS EARLY 1, ALWAYS EARLY 1, DIRP ;Myb-like DNA-binding domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G023201
[exp]
1877 / 0 AT3G21430 939 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Potri.013G020500
[exp]
742 / 0 AT3G05380 807 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Potri.005G029000
[exp]
710 / 0 AT3G05380 813 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033961
[exp]
1270 / 0 AT3G21430 941 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Lus10002879
[exp]
1082 / 0 AT3G21430 764 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Lus10029910
[exp]
273 / 2e-76 AT3G05380 549 / 1e-179 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Lus10004489
[exp]
272 / 9e-76 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF00249 Myb_DNA-binding Myb-like DNA-binding domain
CL0123 PF06584 DIRP DIRP
Representative CDS sequence
>Potri.008G216600.1 pacid=42806989 polypeptide=Potri.008G216600.1.p locus=Potri.008G216600 ID=Potri.008G216600.1.v4.1 annot-version=v4.1
ATGGCCCCGTCCAGAAAGAGAAGTGTAAATAAGCGGTATTCAAACGTTAATGAAGTCACACCTACCAAAAATGCAGCAGTTATTACTAACAAAAGCAAGC
CGCGGAAGAGGAAGTTATCTGAAATGTTAGGGCCACAATGGGGTAAGGAAGAGCTAGAAAGGTTCTATAAGGCGTATCGGAAACATGGAAAGGATTGGGA
GAAGGTAGCAGCTGCGGTGCGGAACCGATCTGTGGAAATGGTAGAAGCCCTTTATACTATGAATAAGGCTTACTTATCTCTTCCAAAGGGCTTTGCTTCT
GCTGCTGGGCTAATTGCAATGATGACTGATCACTACTCTAATCTGGGAGAGAGTGACAGTGAGATAGAAAGCAATGGGGGCACAGGAACCTCTCGAAAAT
CTCAGAAGCGTGCTCGGGTAACCAAAGGATCTGATGCACCACCAGTTCCAGATCTTCTACAATCCCAGCCAGCTGCATCAAATTATGGCTGCTTGTCATT
GTTAAAGAAGAGACGGACTGGAAGCAAGCCTTGGGCTGTTGGGAAGAGGACTCCTCGTGTCCCTGTTACATATTCCTTTGATAAATACAGTGAGGAGAAG
TATGTTTCCCCAATTCGGCAAGGTTTGAAAGTAAAGGCTGATGCTGTTGATGATGATGTTGCTCATGAGATAGCATTGGCCTTGACTGAGGCTTCACAAA
GAGGCGGTTCTCCCCAAGTGTCTCAAACTCCAAAAAGAAAAACAAAGATGCCCTCACATGCTCAGCATGATGAACAAATGCATGCTGAATCAGAGATTAT
GAGTGCCAAGCTTCGTGGTAGTGAAATGGAAGAGGTGGGTTGTGAATTAAGTTTAGGCAGCACAGAAGCTGATGTTGTAGATTATGTAAAAGATGAAAGC
TTTTGGAAGGGGAAGAGATATTATGGAAGGAGGCCACCAGCAGAAGATTTAGACGATAATTTGGATGATGTGAGAGAAGCTTGCAGTGGGACAGAGGAAG
GGCAGAAACTGGATGCTGTCGAAGAATTATTTGAAATGGAGGTTGCAGATACCAAACTTGTGAGGTCCTCCAAGGGTTCAAGAAAAAGAAGTAAGAAGGT
TCTGTTTGGAGAAGTTGAAGATGCTGACTTCGATGCCTTAGAAGCACTGGCTGATTTGTCCTTGAGGTTGCCAGAAACACCTGTTGACACTGGATCTTCT
GTGTATGTTGAGGAAGAAAAGACTGGAATTGTTGCCAAGTCTAAACTGAAAGGGAATCCTTCTTCTCCTGGTGTAAAACCTATCTCCTTCAAGACAACCA
AACAGGGAAAGGTTTTCACTCATAATGCTTCTTCTATTCCAGAAGAAAAAGATGTAGCCCATCAGTTTGGTCCTGTGATGCGGAAAAGGAGACAAAAACA
CATGCCATCTAAAATTTCAGAAAATGAAGAGCATGCTGATTCTTATCTCGGTGAATCTCAAAAGGTTGAGGTTACAACAGATGATAATAACTTTATGAGT
AAGGGAAAACGCTCTCAGTATGCTGCACACTCAAAACAAGGGAAATTGATGAAATCTGCAGAACGTACTTCTTCAAGTAATAATCATGGAAGAGAATTGA
ATAATTCTGCTCCAACTACCATACAGGTTTTATCTGCCAGCCAATTCAACTTGCCTACTAAAGTGAGGAGTAGCCGTAAACTAAACACTCCAAAGATGTT
GGTTGAGAGAGATTCCAAGTCTTCAGAGAATATTGTAAATAGCCAATCTAATACTCTCATTCCTTCATTCCAGGATAGAGTACTTGGTCTCAAGGGAAAG
CTTTCTAATTGCCTTTCCCGGTATCTAGTGCGGAGATGGTGTGTTTTTGAGTGGTTCTATAGTGCAATAGATTATCCATGGTTTTCTAAAAGGGAGTTTG
TTGAATACCTGGAGCATGTTCGATTGGGTCATATCCCAAGACTAACTCGTGTTGAATGGGGTGTCATTCGGAGTTCCCTTGGTAAACCACGAAGATTTTC
AGAGCAATTTTTGAAGGAAGAGAAAGAGAAGCTTAACCATTATCGGGAATCTGTTAGAGAACACTATGCTGAACTTCGTACTGGTACCAGGGAAGGACTG
CCAACTGATTTAGCTCGACCTCTATCAGTCGGTCAACGCATTATCGCGCTTCATCCAAGGACAAGTGAGATTCATGATGGAAGTATATTAACTGTTGATC
ATAGTCGGTGTCATGTTCAGTTTGACCGACCTGAACTAGGGGTTGAATTTGTCATGGATGTTGATTGCATGCCTTTGAATCCATTGGAAAATATGCCTGC
ATCTATGATAGGGCACAATATTGCATTGAATAGATACATGAAGAACTTAAATGAGCTCAAAATCAGTGGGCAACCAGCAGAGAAGAAGATGGAAGGATTC
AAATTTTCTCCATGTGAGAACCTGGAGGATAACAGTGCTCCTCCACATACTTCCCTGTCGACTTATCACTGTAGTGTTTTATTACAGCAGCCAATGGGAG
GTTTGGGAGGTTCTAATTCACAAGTCAACAATGGAGGTGAAACTATTAATACCCAGCAAGCAACAAATGCCCAGCCTTCGTTTTATGCACAGATCCAAGC
TAAGGAAGCCGATATCCATGCTCTTTCTGAATTAACTCGAGCTCTTGACAAAAAGGAGGCTGTGGTGTCTGAGTTGAAGCACATGAATGATGAGGTGTTG
GAAAGTCAAAAACGTGGAGAAAACTCTCTCAAGGATTCAGAAGCTTTTAAGAAGCACTATGCTGCAGTACTTCTACAGTTAAATGAAGTCAATGAGCAGG
TTTCTTCTGCTCTCTTTTTCTTGAGGCAACGTAACACATATCAAGGGAACATCCCACATGTGCTGTCAAAGTCCATACCCAATATAGACGACCCAGCTTG
CCATGGCAGCTCCTTTGATTCTTCTGCAGATGATACTCAGGAATCTGGATCTCATGTGGTGGAAATTGTCGAAAGTTCAAGAACAAAAGCCCAGACAATG
GTTGATGCAGCTATGCAGGCAATGTCATCCTTAAAGAAGGAAGGAAGCAGCATTGAGAGTATTGAGGATGCTATAGATTTTGTAAATAATAAACTTTTAG
CAGATGATTCAAGTGTGCCAGCCATCAGATCTCCTGTCCCTGCAAGTTCAGTTCAGGACAGTCCGGCTTCTCAGGATCAATTAAGTTCCTGTGTAGCAAA
TCCAGGGGCAATCAACCATGCACCTGATGCAAAGTGGAACAATTTGTCCAACGAAAATGAAGTACAAATCCCTTCAGAACTTATTTCACACTGTGTAGCT
ACTTTACTAATGATTCAGAAATGTACAGAACGACAATTTCCACCGAGTCATGTTGCCCAGGTACTGGATTCTGCCGTTATAAGTTTGAAGCCGTGTTGTT
CAGTTAACCTTCCCATTTATGCAGAGATACAGAAATTCATGGGGATAATTAAGAATCAGATATTAGCACTGATACCTACGTAG
AA sequence
>Potri.008G216600.1 pacid=42806989 polypeptide=Potri.008G216600.1.p locus=Potri.008G216600 ID=Potri.008G216600.1.v4.1 annot-version=v4.1
MAPSRKRSVNKRYSNVNEVTPTKNAAVITNKSKPRKRKLSEMLGPQWGKEELERFYKAYRKHGKDWEKVAAAVRNRSVEMVEALYTMNKAYLSLPKGFAS
AAGLIAMMTDHYSNLGESDSEIESNGGTGTSRKSQKRARVTKGSDAPPVPDLLQSQPAASNYGCLSLLKKRRTGSKPWAVGKRTPRVPVTYSFDKYSEEK
YVSPIRQGLKVKADAVDDDVAHEIALALTEASQRGGSPQVSQTPKRKTKMPSHAQHDEQMHAESEIMSAKLRGSEMEEVGCELSLGSTEADVVDYVKDES
FWKGKRYYGRRPPAEDLDDNLDDVREACSGTEEGQKLDAVEELFEMEVADTKLVRSSKGSRKRSKKVLFGEVEDADFDALEALADLSLRLPETPVDTGSS
VYVEEEKTGIVAKSKLKGNPSSPGVKPISFKTTKQGKVFTHNASSIPEEKDVAHQFGPVMRKRRQKHMPSKISENEEHADSYLGESQKVEVTTDDNNFMS
KGKRSQYAAHSKQGKLMKSAERTSSSNNHGRELNNSAPTTIQVLSASQFNLPTKVRSSRKLNTPKMLVERDSKSSENIVNSQSNTLIPSFQDRVLGLKGK
LSNCLSRYLVRRWCVFEWFYSAIDYPWFSKREFVEYLEHVRLGHIPRLTRVEWGVIRSSLGKPRRFSEQFLKEEKEKLNHYRESVREHYAELRTGTREGL
PTDLARPLSVGQRIIALHPRTSEIHDGSILTVDHSRCHVQFDRPELGVEFVMDVDCMPLNPLENMPASMIGHNIALNRYMKNLNELKISGQPAEKKMEGF
KFSPCENLEDNSAPPHTSLSTYHCSVLLQQPMGGLGGSNSQVNNGGETINTQQATNAQPSFYAQIQAKEADIHALSELTRALDKKEAVVSELKHMNDEVL
ESQKRGENSLKDSEAFKKHYAAVLLQLNEVNEQVSSALFFLRQRNTYQGNIPHVLSKSIPNIDDPACHGSSFDSSADDTQESGSHVVEIVESSRTKAQTM
VDAAMQAMSSLKKEGSSIESIEDAIDFVNNKLLADDSSVPAIRSPVPASSVQDSPASQDQLSSCVANPGAINHAPDAKWNNLSNENEVQIPSELISHCVA
TLLMIQKCTERQFPPSHVAQVLDSAVISLKPCCSVNLPIYAEIQKFMGIIKNQILALIPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G21430 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EA... Potri.008G216600
[exp]
0 1
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Potri.012G022700
[exp]
4.00 0.7570
AT1G28090 Polynucleotide adenylyltransfe... Potri.003G164400
[exp]
10.19 0.7434
AT1G60560 SWIM zinc finger family protei... Potri.006G245800
[exp]
10.95 0.6708
AT1G79890 RAD3-like DNA-binding helicase... Potri.001G182600
[exp]
20.00 0.6922
AT5G49160 MET2, DMT1, DMT... METHYLTRANSFERASE I, METHYLTRA... Potri.018G138000
[exp]
20.49 0.6724 MET1.1
AT3G49600 SUP32, ATUBP26,... ubiquitin-specific protease 26... Potri.005G179500
[exp]
24.97 0.6796 UBP26.2
AT5G35930 AMP-dependent synthetase and l... Potri.019G043800
[exp]
25.09 0.6906
Potri.003G044301
[exp]
32.09 0.7046
AT1G25570 Di-glucose binding protein wit... Potri.008G117000
[exp]
33.57 0.6347
AT4G32420 Cyclophilin-like peptidyl-prol... Potri.018G030300
[exp]
38.07 0.6314

Potri.008G216600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.