Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 559 / 5e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 519 / 8e-164 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G49140 464 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 449 / 2e-139 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27170 452 / 3e-138 transmembrane receptors;ATP binding (.1.2) AT5G18360 439 / 8e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 443 / 4e-137 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 441 / 5e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 431 / 2e-133 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G104301 [exp] 738 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 729 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097000 [exp] 706 / 0 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 698 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104901 [exp] 696 / 0 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 686 / 0 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G002500 [exp] 683 / 0 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001602 [exp] 676 / 0 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G307300 [exp] 667 / 0 AT5G17680 597 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011104 [exp] 639 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005171 [exp] 572 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10029722 [exp] 570 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 546 / 8e-174 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 542 / 7e-173 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 541 / 2e-172 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 537 / 3e-171 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018616 [exp] 530 / 3e-167 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 501 / 4e-158 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019708 [exp] 486 / 8e-149 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.008G220200.2 pacid=42806079 polypeptide=Potri.008G220200.2.p locus=Potri.008G220200 ID=Potri.008G220200.2.v4.1 annot-version=v4.1 ATGGCTGCTTCTTATTCACGTACTACCACTCGGTGGAAATATGATGTCTTCCTCAGTTTCAGAGGTGAAGACACCCGGAAGAGTTTTACTGACCATCTTT ATACTGCCTTGTGTCACAGAGGAGTCATCACTTTTAGAGATGATCAAGAACTTGAGAGAGGGAATGAAATTTCCCGTGAACTTCTTCAAGCAATACAAGA TTCAAGGTTTTCAGTGATAGTTTTCTCAAGAAACTATACTTCTTCCACATGGTGCTTGAACGAACTAGTAAAAATTGTGGAATGCATGAAACAAGGTAGA CAAACAGTTATTCCAGTTTTCTATGATGTTGATCCTTCTGAAGTAAGGAATCAGACAGGGAGACTTCAACAGGCCTTTGCTGATCATGAAGAGGTTTTCA AAGACAACATTGAGAAGGTGCAGACCTGGAGGATTGCGATGAAACTAGTGGCCAATCTTTCTGGATGGGATTTGCAGGATAGGCACGAGTCAGAGTTTAT TCAAGGCATTGTTGAAGAGATAGTATGCAAGTTGAGAAAATCAAGTTACAGCATGTCATGGGTAACCGAGAACTTAGTTGGAATGGATTGGCGTTTGGAG GAAATGAGTTTATATTTAGGAGTAGAGCAGCTGAATGATGTTCGCGTTATAGGGATCTGTGGGATGGGTGGAATAGGTAAGACGACCATTGCTAGAGCTG TCTATGAGAAGATGCTGGGTCATTTTGAAGGCAGCAGCTTTCTTGCAAATGTTAGAGAAGTTGAGGAGAAACATGGTTTAGTTCGCTTACAGGAACAACT TCTTTCAGACACGTTGATGGATAGAAGGACCAAAATCTCTGATGTTCATAGAGGAATGAATGAAATAAGGGTTAGGCTGCGTTCTAGAATGGTTCTTGTT GTTCTTGATGATGTTGATCAATTGGTCCAATTAGAATCTTTAGTTGGAGATCGTAATTGGTTTGACAATGGAAGTAGAGTCATAATAACCACAAGAGATG AACTTCTTCTGAAACAATTTGGAGTTGATAAAATATATAGAGTTGCAAGTTTAAATAACATTGAAGCCGTTCAACTCTTTTGTCTGAAAGCCTTCAGAAG TTATTGTCCCCCGGAAGATTATGTGCTTCAGACCATCCAAGTTGTAAAGTATGCAGATGGCCTTCCATTAGCTCTCCATGTTTTGGGTTCATTTTTTTCT GGGATCAGATCTGTAGAATTGTGGAACCATTCATTAAAAAGACTGAAAGATATCCCAGATAAAGGAATTCTAGATAAACTTAAAATAAGTTTTGATGGAC TTAACGAAGTAGAGAAGAAAATATTTCTAGATATTGCTTGTTTTTTCAACGGGTGGGAAGAAGATTGTGTGACAAAATTAATGGAAAGTTCTGGTTTCTA TCCACAGATTGGAATAAGGATTCTCGTAGAAAAATTTCTCATAAATATTTCAGATAACAGAGTATGGATGCATGACTTGCTTCAAGAAATGGGTCGACAA ATTGTCAAGAGAGAGTCTCATGAAGAACCTGGAAAACGCACTAGGTTGTGGCTCTGTGAGGATGTCATTCACGTTTTGCTAAATAATACGGGAACCGACA AAGTTGAAGGCATCGTCCTGAATTCAAATGACGAAGTAGATGGACTATACTTAAGTGCTGAATCAATAATGAAGATGAAAAGGTTAAGAATTCTCAAACT CCAAAATATAAACCTTTCCCAGGAAATTAAATATCTCTCCAATGAGTTGAGATATCTTGAATGGTGCCGATATCCTTTCAAATCATTGCCATCAACTTTT CAACCGGATAAACTTGTTGAGCTCCACATGCGTCATAGCAGCATTAAACAATTATGGGAGGGAGTGAGACCTTTAAAGTTGCTTAGAGCTATTGATCTCA GACACTCCCGAAACTTAATAAAGACTCCAGACTTCAGACAAGTTCCAAATCTTGAGAAGCTGAATCTTGAGGGTTGCAGAAAACTGGTCAAGATTGACGA CTCTATCGGAATTCTGAAAGGGCTTGTTTTCTTGAATTTGAAGGACTGCGTAAAGCTTGCCTGTCTTCCAACAAACATATGTGAGTTGAAGACCCTCAGA ATTCTTAACTTGTATGGATGCTTCAAACTTGAAAAATTGCCTGAGATGTTGGGAAATGTAATAAATCTGGAGGAGCTTGATGTAGGCAGAACTGCTATAA CACAACTGCCATCAACCTTTGGTCTCTGGAAAAAACTTAAGGTGCTATCTTTTGATGGATGCAAGGGACCAGCACCTAAATCATGGTATTCTCTCTTCTC CTTCCGGTCACTTCCAAGAAATCCTTGTCCAATTACTTTGATGCTGTCCTCTCTGTCAACGCTATACTCTTTGACAAAGCTAAATCTAAGCAACTGCAAT CTCATGGAAGGAGAACTTCCTGATGATATGAGCTGCTTCCCATCATTGGAAGAATTAGACCTTATTGGAAATAACTTTGTGAGAATACCTTCAAGCATCA GCCGGCTCTCTAAACTTAAAAGCCTCAGGTTAGGCAATTGCAAGAAGCTTCAGTCACTTCCGGATCTTCCATCAAGGCTTGAATATCTCGGGGTGGACGG TTGCGCTTCGTTGGGAACTCTTCCAAATCTATTTGAAGAATGTGCCCGCTCAAAGTTTTTGTCCTTGATTTTTATGAACTGCTCCGAGTTGACTGATTAT CAAGGGAATATCAGCATGGGTTTGACATGGCTTAAATATTACCTCCATTTCTTGTTGGAAAGCGGCCATCAGGGTCATCCAGCCTCTTGGTTTTTTACCT GTTTTCCAGGAAGTGAAATTCCTAGTTGGTTTCACCATAAGAGCGTGGGTCATTCTTTAACAATACGGCTACTTCCTTATGAGCATTGGTCCAGCAGTAA GTGGATGGGATTAGCTGTTTGTGCATTCTTTGAAGAGCTTGATTGTGGTGATTCATGTCTTATTACATTGAACTTCGATATCAAAGGCTTCAAATCTAGG AGCTACTTTCTAGAGTACCCTGAAGGTTCAACATTTACGTCAAATCAGGTTTTCTTTATCTTCTTTCCCAGAGGCAAGTTTCCGGAACCACTTGCTGTGT CTAATACTACTTCTCAGCCCATTGAGGTGGAGTTCCGGTCATCTATTCAAGAAAGAAACACCAACAATGAGTTTCAGGTTCTTTCTGCCCGAGTCATGAA TTGGGGGTTCCGCATGGTGTACGAGGAAGACACACTGCAGTTCAACGAACCGAATACAGGTGTCGACTCTATCAATGGATTGCATTCTGAAGAGTTGAGG ATATTGGATGAGAACAACTCCATCATCCCATGCAAAAATATTGAGGGCAAATGCCTCCCAGAATAA
AA sequence Show only first row Show all	>Potri.008G220200.2 pacid=42806079 polypeptide=Potri.008G220200.2.p locus=Potri.008G220200 ID=Potri.008G220200.2.v4.1 annot-version=v4.1 MAASYSRTTTRWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERGNEISRELLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVECMKQGR QTVIPVFYDVDPSEVRNQTGRLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDRHESEFIQGIVEEIVCKLRKSSYSMSWVTENLVGMDWRLE EMSLYLGVEQLNDVRVIGICGMGGIGKTTIARAVYEKMLGHFEGSSFLANVREVEEKHGLVRLQEQLLSDTLMDRRTKISDVHRGMNEIRVRLRSRMVLV VLDDVDQLVQLESLVGDRNWFDNGSRVIITTRDELLLKQFGVDKIYRVASLNNIEAVQLFCLKAFRSYCPPEDYVLQTIQVVKYADGLPLALHVLGSFFS GIRSVELWNHSLKRLKDIPDKGILDKLKISFDGLNEVEKKIFLDIACFFNGWEEDCVTKLMESSGFYPQIGIRILVEKFLINISDNRVWMHDLLQEMGRQ IVKRESHEEPGKRTRLWLCEDVIHVLLNNTGTDKVEGIVLNSNDEVDGLYLSAESIMKMKRLRILKLQNINLSQEIKYLSNELRYLEWCRYPFKSLPSTF QPDKLVELHMRHSSIKQLWEGVRPLKLLRAIDLRHSRNLIKTPDFRQVPNLEKLNLEGCRKLVKIDDSIGILKGLVFLNLKDCVKLACLPTNICELKTLR ILNLYGCFKLEKLPEMLGNVINLEELDVGRTAITQLPSTFGLWKKLKVLSFDGCKGPAPKSWYSLFSFRSLPRNPCPITLMLSSLSTLYSLTKLNLSNCN LMEGELPDDMSCFPSLEELDLIGNNFVRIPSSISRLSKLKSLRLGNCKKLQSLPDLPSRLEYLGVDGCASLGTLPNLFEECARSKFLSLIFMNCSELTDY QGNISMGLTWLKYYLHFLLESGHQGHPASWFFTCFPGSEIPSWFHHKSVGHSLTIRLLPYEHWSSSKWMGLAVCAFFEELDCGDSCLITLNFDIKGFKSR SYFLEYPEGSTFTSNQVFFIFFPRGKFPEPLAVSNTTSQPIEVEFRSSIQERNTNNEFQVLSARVMNWGFRMVYEEDTLQFNEPNTGVDSINGLHSEELR ILDENNSIIPCKNIEGKCLPE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.008G220200 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Potri.002G259300 [exp]	5.09	0.9156
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Potri.012G043200 [exp]	9.53	0.8922	MKK9.1
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.003G129800 [exp]	17.14	0.8603
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G355500 [exp]	18.41	0.9060
AT1G01180			S-adenosyl-L-methionine-depend...		Potri.014G103800 [exp]	18.97	0.8969
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.010G210900 [exp]	21.21	0.8701
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.002G235900 [exp]	22.13	0.8521
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	24.24	0.9041
AT5G51910	TCP	TCP19	TCP family transcription facto...		Potri.012G135900 [exp]	27.34	0.8772
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G147600 [exp]	27.38	0.8889

Compare expression of checked genes

Potri.008G220200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.