Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25835 363 / 3e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 352 / 9e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 349 / 8e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 316 / 2e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 317 / 6e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 314 / 3e-101 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28600 310 / 7e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 307 / 1e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28580 305 / 6e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G46620 302 / 7e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G231200 [exp] 857 / 0 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G093600 [exp] 355 / 3e-117 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G169000 [exp] 353 / 4e-116 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G007800 [exp] 319 / 3e-103 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 318 / 7e-103 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G067400 [exp] 311 / 3e-100 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 311 / 3e-100 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 310 / 9e-100 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.012G020800 [exp] 308 / 3e-99 AT2G46620 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042166 [exp] 324 / 1e-104 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 320 / 2e-103 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 310 / 1e-99 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015802 [exp] 306 / 9e-99 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015354 [exp] 306 / 4e-98 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030220 [exp] 305 / 7e-98 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 303 / 7e-97 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 297 / 3e-96 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10005991 [exp] 300 / 9e-96 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 297 / 5e-95 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.009G024400.1 pacid=42772332 polypeptide=Potri.009G024400.1.p locus=Potri.009G024400 ID=Potri.009G024400.1.v4.1 annot-version=v4.1 ATGGATATATTGTCACAACTTTGGTCACTCTTAGGTCTTCTCACAGTCCTTCAAAACATCTTACCTGCACAACTCCTCTCCCTTCTTCACTCCCTCATCG AGTCCCTCCAAGACCTCATTTCCCAATATTCATACTTTGACATCCCGGAATTTAATGGCTACTGTGGTGTTGACATCAATGATCTCTATCGCCATGTCAA CCTCTACCTCAACTCTGTCAACTCCTCTGCCACTGCCTCCACTTGCCGACGCTTCTCCCTCTCCCGGTCCAGGTCATCCAATTGCATTTCCTTCACTATA GCTCCCAATCACACCATCCACGACTCCTTCAATGGCCACTCTCTTTGTTGGACACACCAAGTTGACACTGTACAGGACTCATTAGAAGAGAAACGTAGCT TTACTCTCAAACTTCCAAAGAGACACCGGCATATGCTGCTGTCGCCTTATCTCCAGCATGTGACATCGCGTGCTGAAGAGTTCGAGCGAGTATCAAGAGA GAGGAGGCTGTTTACTAACAATGGCAATGCTTCATACGAGTCAGGCTGGGTCTCAGTTCCTTTCCGTCATCCATCCACCTTCGAAACGCTGGCTCTGGAG CCTCAATTGAAGAGGCAGATAATGGAGGACTTGAAGGCATTTTCTAGTGGCAGAGAGTACTATCATAGAGTTGGGAGGGCATGGAAGAGGGGTTACTTGC TCTATGGTCCTCCAGGGTCAGGCAAATCAAGTCTAATAGCTGCAATGGCTAATTATTTGTGCTACGATGTGTATGATCTTGAACTCACCAAAGTCACAGA CAACTCAGATCTCAGAGCTCTGCTAATCCAAACTAGCAATAGATCAATAATTGTGATTGAGGACATAGATTGTTCCCTTGATCTGACTGCTGATAGAATG CTAAAGGCCACTACTGCTACAGCTACAAGAAGGAAAAGATCATCATCATCAGGTTATAATAAGGACCCGGGTTCAGGCAATTATCAGTTATTAGAGGAGA GTGGGCGTGTTACCTTATCAGGTCTCCTCAACTTCACAGATGGATTATGGTCATGTTGCGGGGAGGAGAGGATAATAGTGTTCACAACCAATCACAGAGA CAAAGTGGATCCTGCATTGGTTAGATGCGGGCGGATGGATGTGCATGTAAGCTTAGGCCCTTGTGGTATGCACGCGTTCAAGGCATTGGCCATGAACTAT CTTGGGATAGAGGAGCATTCTTTGTTTGATGTGGTAGAGAGCTGTATACGGTCAGGTGGCGCACTCACTCCTGCTCAGATAGGGGAGATATTGCTGCGGA ATAGAGGGAGCAATGCTGATTTAGCAATGACAGAAGTGGTGTCTGCAATGCAAACCAGAATTTTGAGTTCTGGTGGCACTGAACATCTAAATACTAGTAT AGAGTATGAAGATACGGTGACCTTGACAAGGTCACCACAGAGTGTGTTAACGGTAGGGTCGTCACCGGAGAATTGGGACTCATCTCCAGGCAAGATTAGC GGGAAGAAGAGGAAGGCCAAGTTTCTTGTTAGATTAAGATCTTTGACGAAGTCCGGCTCTGGTAGAAGGGGTGTGTGA
AA sequence Show only first row Show all	>Potri.009G024400.1 pacid=42772332 polypeptide=Potri.009G024400.1.p locus=Potri.009G024400 ID=Potri.009G024400.1.v4.1 annot-version=v4.1 MDILSQLWSLLGLLTVLQNILPAQLLSLLHSLIESLQDLISQYSYFDIPEFNGYCGVDINDLYRHVNLYLNSVNSSATASTCRRFSLSRSRSSNCISFTI APNHTIHDSFNGHSLCWTHQVDTVQDSLEEKRSFTLKLPKRHRHMLLSPYLQHVTSRAEEFERVSRERRLFTNNGNASYESGWVSVPFRHPSTFETLALE PQLKRQIMEDLKAFSSGREYYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSDLRALLIQTSNRSIIVIEDIDCSLDLTADRM LKATTATATRRKRSSSSGYNKDPGSGNYQLLEESGRVTLSGLLNFTDGLWSCCGEERIIVFTTNHRDKVDPALVRCGRMDVHVSLGPCGMHAFKALAMNY LGIEEHSLFDVVESCIRSGGALTPAQIGEILLRNRGSNADLAMTEVVSAMQTRILSSGGTEHLNTSIEYEDTVTLTRSPQSVLTVGSSPENWDSSPGKIS GKKRKAKFLVRLRSLTKSGSGRRGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25835			P-loop containing nucleoside t...		Potri.009G024400 [exp]	0	1
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.002G049200 [exp]	1.73	0.8413
AT5G67090			Subtilisin-like serine endopep...		Potri.007G045100 [exp]	5.47	0.8177	Pt-AG12.1
AT3G52490			Double Clp-N motif-containing ...		Potri.010G241600 [exp]	6.00	0.8490
AT5G36930			Disease resistance protein (TI...		Potri.019G019710 [exp]	6.48	0.8363
AT3G26935			DHHC-type zinc finger family p...		Potri.001G070100 [exp]	6.70	0.8388
AT2G26520			unknown protein		Potri.009G106300 [exp]	12.64	0.8123
AT5G17680			disease resistance protein (TI...		Potri.019G070479 [exp]	14.00	0.8202
AT3G24330			O-Glycosyl hydrolases family 1...		Potri.018G072300 [exp]	15.62	0.8390
AT1G27170			transmembrane receptors;ATP bi...		Potri.005G004233 [exp]	16.00	0.7685
AT3G52490			Double Clp-N motif-containing ...		Potri.016G071800 [exp]	18.73	0.8281

Compare expression of checked genes

Potri.009G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.