Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 488 / 2e-163 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 480 / 2e-161 GRAS GRAS family transcription factor (.1) AT2G37650 466 / 7e-156 GRAS SCL9 GRAS family transcription factor (.1) AT2G29065 434 / 2e-144 GRAS family transcription factor (.1) AT1G07520 416 / 2e-136 GRAS GRAS family transcription factor (.1) AT3G46600 403 / 6e-135 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 394 / 4e-129 GRAS SCL11 GRAS family transcription factor (.1) AT5G48150 198 / 3e-56 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT4G17230 198 / 1e-55 GRAS SCL13 SCARECROW-like 13 (.1) AT2G04890 194 / 2e-55 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241900 [exp] 1036 / 0 AT1G07530 497 / 4e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032700 [exp] 553 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 541 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 530 / 4e-180 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G242100 [exp] 526 / 3e-179 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.001G241700 [exp] 518 / 2e-175 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 518 / 7e-175 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033300 [exp] 513 / 7e-174 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 511 / 4e-172 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016521 [exp] 518 / 2e-175 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 518 / 3e-175 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 502 / 2e-172 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10040787 [exp] 492 / 8e-167 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 481 / 1e-160 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 480 / 1e-160 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 454 / 6e-151 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 437 / 1e-149 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 448 / 1e-148 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 445 / 4e-148 AT2G37650 571 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.009G032900.1 pacid=42772615 polypeptide=Potri.009G032900.1.p locus=Potri.009G032900 ID=Potri.009G032900.1.v4.1 annot-version=v4.1 ATGAACCCAGTTTTTAAAGATCCTACAGCTGATACTGTTTTGAAGTGCATCAGCCAGATTCTTATGGAAGAAGAGTCCAATGAACAAACCTTTATTGCAC GGGACTTTTCTCTTCGGGCTGCCGAAAAACCCTTTTCTGATATCCTTGATCAGAAAAGTTCCTCGTCAGACAGTGAAGTATCCGATCCAAATCAAATTAT AAAGACTGTTAGTACTCACTGTTGCAATATTTATGGTTGTAACAGCTCCGAGACAGCTGACAACATGGTTGTGTCCAGCTTCATACACAACAGAGAAGCT CCGTCTGTTAACTACACTGTCCCGTTGAGTTTGCAGGACAATTCACCTCCATTTTTTCCTGAAAGCATTTTTCAAACTTTCCCTGAGCAGGTGGATTCTT CTGTAAATGTAGCCCTTGGTGCGAGCCAATTGGATGTGTTGTTTAAGGGAGGGACAGAAGAGACTTGGGAATTTCATCACCAGGCAAATGAAATGATTCT TGATTTTGAAAACAACAAAGTGACTCCAGTCATGGCGACTAAAGAGAAAAGTTATTGGGATCACTCGGCATGTGAGCTGAAGGAAAGAAAGAATCATTAC AAAGTGGAGAAGAAGTCAGAAACGAGGAGAAATAAGCACTCTTCAGTTTATGCTGAAGCAGCTGAGCAATATGGAATGTTTGCTGAGGTATTTCCGTCTA GTGGTGGAGATGACGAGCCAGTTTGGTTAAACCTTAATGAAACATTTCAAAATGGTCCAGGTATGATACCTTATCTAAGAGAACAATCAAGAGGATCTAA TTATGGAATGCTCTTCAGGAAGAACCACGTTAGCTGCAGGGAATTGGTTGATACGAGGACTCTTCTGATACACTGTGCAGAAGCTGTAGCAAGCAACGAT CACGGGAGTGCAATTGAACTATTAACACAGATTAGGCAGCATTCTACTCCTTTTGGTGATGGATCCCAGAGGCTGGCCCATTGCTTTTCTAATGCCCTAG AGGCTCGCATGGCTGGCAATGGAAGTGAGGTATATGCAAGTCTTGCTGCTAACAGGGTGACATCCGAACGCATATTAAAAGCTTGCAGACGATTTATTTC AGCTAGCCCTTTCATGGTCATGTCGAATCTCTTCTCAACGCAAACTATCATGGACCTTTCTGAAAATGCAGCAAGGCTGCACATCATAAATTTTGGTATT CTCTATGATTTCCCATGGCCTTCCTTAATTCAGCATCTCTCAGTGAGACCTGGTGGTCCTCCGGTGCTTCGCATCACCGGAATAGAGTTTCCCCAGACTG GTTACAGGTCAGCAGAAACAATTGAAGAAATAGGACTTTACTTGGCAAGTTATTGTGATAAATTTAATGTCCCTTTCGAGTATAATGCGATATCACAAAA ATGGGAAAATGTCCAGCTCGAGGACCTCAAGATCGACAGAGATGAAGTAACTGTTGTTAGCAGTTTATACAGGTTTCGGCACCTCCTTGATGAGACAGTA GTCTTGAACGGTCATAGGAATGCTGTTCTTAACTTAATTAAGAGGATTAATCCAGCTGTCTTCATTCATGGGATCGTTAACGGGGCTTACAATTCTCCTT TCTTCGTTTCGCGTTTCCGGGAAGCCCTCTTCTACTTCTCATCATTGTTTGATATGCTCGAAGCCATTACAGCCCGTGAAGATCCAGAGAGGTTGGTGTT TGAACAAGAGGTATTTGGAAAGGAAATCCTGAATGTCATAGCATGTGAAGGATGTGACAGAATCGAAAGGCCAGAGAAATATAAGCAGTGGCAGGCTCGG AATGTAAGGGCTGGTTTCAGGCAGCTCCCACTGAAAGAAGGGATCATGGAGAAGGTGAGAGAACAAGTGAAGTCAAGTTATCACAAGGATTTTCTGATGG ATCAAGATGGCCAGTGGATGCTTCAGGGATGGAAAGGCAGAATCCTATTTGCCATTTCCTGCTGGAAATCTGCCTAA
AA sequence Show only first row Show all	>Potri.009G032900.1 pacid=42772615 polypeptide=Potri.009G032900.1.p locus=Potri.009G032900 ID=Potri.009G032900.1.v4.1 annot-version=v4.1 MNPVFKDPTADTVLKCISQILMEEESNEQTFIARDFSLRAAEKPFSDILDQKSSSSDSEVSDPNQIIKTVSTHCCNIYGCNSSETADNMVVSSFIHNREA PSVNYTVPLSLQDNSPPFFPESIFQTFPEQVDSSVNVALGASQLDVLFKGGTEETWEFHHQANEMILDFENNKVTPVMATKEKSYWDHSACELKERKNHY KVEKKSETRRNKHSSVYAEAAEQYGMFAEVFPSSGGDDEPVWLNLNETFQNGPGMIPYLREQSRGSNYGMLFRKNHVSCRELVDTRTLLIHCAEAVASND HGSAIELLTQIRQHSTPFGDGSQRLAHCFSNALEARMAGNGSEVYASLAANRVTSERILKACRRFISASPFMVMSNLFSTQTIMDLSENAARLHIINFGI LYDFPWPSLIQHLSVRPGGPPVLRITGIEFPQTGYRSAETIEEIGLYLASYCDKFNVPFEYNAISQKWENVQLEDLKIDRDEVTVVSSLYRFRHLLDETV VLNGHRNAVLNLIKRINPAVFIHGIVNGAYNSPFFVSRFREALFYFSSLFDMLEAITAREDPERLVFEQEVFGKEILNVIACEGCDRIERPEKYKQWQAR NVRAGFRQLPLKEGIMEKVREQVKSSYHKDFLMDQDGQWMLQGWKGRILFAISCWKSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032900 [exp]	0	1
AT1G63810			unknown protein		Potri.007G024600 [exp]	33.54	0.5916
AT5G12000			Protein kinase protein with ad...		Potri.006G225300 [exp]	38.07	0.5274
AT3G55160			unknown protein		Potri.004G128601 [exp]	49.74	0.5793
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Potri.003G106300 [exp]	69.49	0.5486
AT1G01540			Protein kinase superfamily pro...		Potri.017G146000 [exp]	136.47	0.5034
AT3G23220	AP2_ERF	ESE1	ethylene and salt inducible 1,...		Potri.010G072600 [exp]	204.71	0.4803

Compare expression of checked genes

Potri.009G032900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.