Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 515 / 3e-173 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 489 / 5e-164 GRAS GRAS family transcription factor (.1) AT2G37650 478 / 2e-159 GRAS SCL9 GRAS family transcription factor (.1) AT3G46600 467 / 4e-159 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 466 / 1e-156 GRAS SCL11 GRAS family transcription factor (.1) AT2G29065 451 / 3e-150 GRAS family transcription factor (.1) AT1G07520 416 / 5e-136 GRAS GRAS family transcription factor (.1) AT5G48150 210 / 5e-60 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT4G17230 207 / 8e-59 GRAS SCL13 SCARECROW-like 13 (.1) AT1G50600 204 / 5e-57 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242100 [exp] 1028 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.001G242000 [exp] 615 / 0 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.009G033100 [exp] 606 / 0 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.006G086600 [exp] 568 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.009G032800 [exp] 546 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032700 [exp] 541 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 530 / 2e-179 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.008G057400 [exp] 526 / 8e-178 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G241800 [exp] 512 / 8e-172 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040787 [exp] 615 / 0 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 556 / 0 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 526 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10040790 [exp] 508 / 2e-170 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 504 / 3e-169 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 504 / 1e-168 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 500 / 2e-167 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 487 / 9e-164 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10001577 [exp] 486 / 1e-162 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 479 / 6e-160 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.009G033300.2 pacid=42771786 polypeptide=Potri.009G033300.2.p locus=Potri.009G033300 ID=Potri.009G033300.2.v4.1 annot-version=v4.1 ATGGATACCCTTTTACAAGAATACCCAAATTCCATGAACAGATTCATGTTTGACCATGCCTCGGTTTCTTTCTCTTCGAATAGGAATCTTTTTAATGGAT ATCAACTCAATGATACCATGAGTGATCCAAATCCTTCTTTTAATTCTTTCAATCCTGAACCTCCTAATGACTCAACATCGTCATCTTCCTCTTCAAATTC ATGCTCTGAAGGATATGGTCCAAGCAATAATGTTACTCTCAAGTTCATAAGTGATGTGCTTTTGGAAGAGGACTTGGAGGGTAAGACCTGTATGTTGCAG GACTGTTTAGCCCTCCAAGCTGCCGAGAAACCCTTCTATGATGTCCTTGGTCAGGAATACCCCCATTCGTCGAATCAAATTCTTTCTTGTTTCGATAAAA AATTTGAAAGCCCGGATAATGGTTTCACTTGGAGTAGCGGTATTGATAGCAGCAACAGCAATCCTCCTGGTAATAACTTGGTTGAAAAATCCGATTGGAT TTTTGATCAAGCTGATTTAGACTTATATCAAGTGCAAACCTCTCCAGTTCTCCCCCTCGAAAGAACCCTTCTAGCACCAGATCTCCACAGTCCGGTGCAC CCGCACCCTTTTGAGGTGCTCAGCAAAGGGGGAGGAGAAGCGGACAATTTTCTTTCAGGTAATGATTATTTCATGGTATCTTCAAAGAGCAACTCGTCCA ACCCTCCGGACAAGGACGAGGGAGACTACTCAACAAATAGTTCACGGGGAAGAAAAAATCATCAGCGGGAAGACAGTGATGATCTAGAAGAAGAGAGGAG CAAGAAGCATTCTGCACTTTCTCCTGCAGAGTCTGAGCTGTCAGAGTTACTTGATGAGGTGTTGCTTTGTCCAGTTGCACAAAATGAGTCAACTCCATGT TCTCTTCTGGGAAATTCACAAAATGGAGCAGCTGGGAATGAGCAGAGAAAAGGGTCTAATGGTAGAACAACACGAGGAAAGAAACGGGGAAAGAAAGGAG AAGTTGTGGATTTGAGCTCTCTCCTCATCCAATGTGCACAGGCTGTGGCAATTGGTGACCAAAGGACTGCAAGTGAGATACTTCAGCAGATTAGGCAACA CTCTTCTTCATTTGGTGATGCAAACCAAAGATTGGCGCATTACTTTGCCAATGCCCTTGATACACGCTTAGCAGGCACCACGACACCCACATTTACACTA TTTGTAAACCCCAGAACATCAGCAGCTGAGATCTTAAAAGCTTACCAGGTATATGTCAGAGCGTGCCCGTTCAAAAGGATGTCTAATTTCTTTGCCAACA GGACAATTCTGAAACTAGAAAAGAAAGCAACAAGACTGCACATCATTGATTTTGGTATTCTTTATGGTTTTCAATGGCCTTGCCTAATCCAGCGTCTCTC GGAAAGGCCTGGTGGACCTCCCAAGTTACGTATTACAGGAATTGAGCTTCCTCAACCAGGTTTCCGGCCTGCAGAAAGGGTTGAGGAGACAGGCCGTCGC TTAGAAAGATATTGTGAGAGGTTTAAAGTCCCTTTTGAGTATATTCCCATAGCACAGAAATGGGAAACCATCAGATATGAGGATCTCAAAATTGACAAAG ACGAGAAGGTTGTCGTCAACTGTCTATATCGGCTAAGGAACCTCCCGGACGACACAATTGTGGAGAATAGTGCAAGGGATGCTGTTTTGAAATTGATCAA CAAGATCAAACCGGACATGTTTATCCATGGGGTTGTAAATGGTAATTTCAATGCGCCATTCTTTGTCACTCGGTTTCGAGAGGCGCTCTACCACTTTTCA TCATTGTTTGATATGTTCGAGGCTACTGTGTCTCGCGAAGATGAACACAGAATGATGTTTGAAAAAGAGCAATACGGAAGAGATATTACCAATGTGATAG CATGTGAGGGTAAAGCAAGAGTTGAAAGGCCAGAGACATACAAGCAGTGGCAGTCTAGGAATCTAAGAGCCGGGTTCAGGCAACTTTCATTGGATCAAGA GCTTTTCAAGGATGTGAGATCTGTGGTGAAATCAGAGTACGATAAAGATTTTGTTGTTGATGCAGATGGCCAGTGGGTGCTACAGGGATGGAAGGGGAGA ATAATCTATGCTCTATCAGTCTGGAAACCAGTCCAGGAGTAA
AA sequence Show only first row Show all	>Potri.009G033300.2 pacid=42771786 polypeptide=Potri.009G033300.2.p locus=Potri.009G033300 ID=Potri.009G033300.2.v4.1 annot-version=v4.1 MDTLLQEYPNSMNRFMFDHASVSFSSNRNLFNGYQLNDTMSDPNPSFNSFNPEPPNDSTSSSSSSNSCSEGYGPSNNVTLKFISDVLLEEDLEGKTCMLQ DCLALQAAEKPFYDVLGQEYPHSSNQILSCFDKKFESPDNGFTWSSGIDSSNSNPPGNNLVEKSDWIFDQADLDLYQVQTSPVLPLERTLLAPDLHSPVH PHPFEVLSKGGGEADNFLSGNDYFMVSSKSNSSNPPDKDEGDYSTNSSRGRKNHQREDSDDLEEERSKKHSALSPAESELSELLDEVLLCPVAQNESTPC SLLGNSQNGAAGNEQRKGSNGRTTRGKKRGKKGEVVDLSSLLIQCAQAVAIGDQRTASEILQQIRQHSSSFGDANQRLAHYFANALDTRLAGTTTPTFTL FVNPRTSAAEILKAYQVYVRACPFKRMSNFFANRTILKLEKKATRLHIIDFGILYGFQWPCLIQRLSERPGGPPKLRITGIELPQPGFRPAERVEETGRR LERYCERFKVPFEYIPIAQKWETIRYEDLKIDKDEKVVVNCLYRLRNLPDDTIVENSARDAVLKLINKIKPDMFIHGVVNGNFNAPFFVTRFREALYHFS SLFDMFEATVSREDEHRMMFEKEQYGRDITNVIACEGKARVERPETYKQWQSRNLRAGFRQLSLDQELFKDVRSVVKSEYDKDFVVDADGQWVLQGWKGR IIYALSVWKPVQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G033300 [exp]	0	1
AT3G56880			VQ motif-containing protein (....		Potri.006G032300 [exp]	1.41	0.9102
AT3G16510			Calcium-dependent lipid-bindin...		Potri.003G160400 [exp]	2.00	0.9087
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.016G009700 [exp]	2.00	0.8851
AT3G56880			VQ motif-containing protein (....		Potri.016G029600 [exp]	2.44	0.8909
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.005G026700 [exp]	7.41	0.8580
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Potri.001G053500 [exp]	8.83	0.8222
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	12.24	0.8791
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.008G219200 [exp]	12.40	0.8731	ATL2.3
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.002G122600 [exp]	12.48	0.8521
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	12.64	0.8648

Compare expression of checked genes

Potri.009G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.