Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07510 1115 / 0 FTSH10 FTSH protease 10 (.1) AT2G29080 1100 / 0 FTSH3 FTSH protease 3 (.1) AT1G50250 417 / 6e-135 FTSH1 FTSH protease 1 (.1) AT5G42270 410 / 2e-132 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 397 / 2e-127 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 391 / 4e-125 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 389 / 3e-124 FTSH8 FTSH protease 8 (.1) AT2G26140 369 / 3e-116 FTSH4 FTSH protease 4 (.1) AT5G53170 362 / 6e-113 FTSH11 FTSH protease 11 (.1) AT5G58870 358 / 3e-111 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099800 [exp] 1095 / 0 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.002G012000 [exp] 416 / 3e-134 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 413 / 2e-133 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 392 / 2e-125 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 386 / 4e-123 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 387 / 5e-123 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 359 / 7e-112 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 356 / 1e-111 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.012G000700 [exp] 353 / 1e-109 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001573 [exp] 1147 / 0 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10016516 [exp] 1083 / 0 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10040785 [exp] 1038 / 0 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10004973 [exp] 748 / 0 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10004972 [exp] 593 / 0 AT1G07510 580 / 0.0 FTSH protease 10 (.1) Lus10012277 [exp] 417 / 5e-138 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 414 / 2e-133 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 413 / 3e-133 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 394 / 3e-126 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 394 / 6e-125 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0126 [poplar] [flax] PF06480 [poplar] [flax] FtsH_ext FtsH Extracellular
Representative CDS sequence Show only first row Show all	>Potri.009G033600.1 pacid=42772608 polypeptide=Potri.009G033600.1.p locus=Potri.009G033600 ID=Potri.009G033600.1.v4.1 annot-version=v4.1 ATGATATTTTCGAAGCTGGGCCGTTCTCTTTCTCGATCCTCCCGCTCTATTAATACACTGCGTGCTGGAAATGGCGGTGTTTTGAGATCCTCGGCGGTTA TTAACAACATAGAAGGAGGGTTCATCGATGGAAGAGGAGGGTTAGGGTTACTGAGAGGTTATTTAACTTCAATTGGAAGTAGAGGAACTCATAATCCCTT TTTATCCGATTTAAATTCCATTCTTGCAAACCCTAGAATTCGACGCTTTTTCTCCACGGAAGCTCCTAAGAAGAAGAATTATGAGAATTTCTATCCCAAG GGAAAGAAGGAAGTTCCGAAAGGGGAAAAGCAGAAATCTGAATCCAAAGAGAATTCTTCGAATGCAGACCATGACGAGTCAGACTTTAATAAGGGGACAT TCATGAAGGCATTCTATTTACTTGCCCCTTTATTTGTGGTTCAACTGCTTTTTTATCCCTTCTCTTTTGGTGATGGTGACAAGCAACAGATTAGTTTCCA AGAGTTCAAAAACAGACTTTTGGAGCCGGGGCTAGTGGATCACATAGTTGTTTCTAATAAATCAGTTGCAAAAGTGTATGTGAAGAGCTCAGCACAGAAT CAAACGAGTGATGATCTTGTTCAAGGTCCAGTTAATGGTGTCCCTGCTAGAGGTCGCGGGGGCCAACATAAGTACTACTTCACTATTGGAAGTGTTGACA CTTTCGAGGAGAAGTTGGAGGAAGCCCAAGAAGCATTGGGGATAGACCCTCATAACTATGTTCCAGTTACATATGCCTCTGAAATGGTTTGGTACCAAGA ACTGATGAGGTTTGCACCTACACTATTGCTTTTGGGAACCCTCATGTACATGGGACGGAGAATGCAAGGTGGATTAGGTGTTGGCGGTGGTGGTGGTGGA AAGGGTGGCCGTGGAATATTCAACATAGGGAAGGCTCATGTAACCAAAGCGGATAAAAACTCCAAGAATAAGATCTATTTCAAAGATGTTGCTGGTTGTG ATGAGGCAAAGCAAGAAATCATGGAATTTGTGCACTTCCTCAAGAGCCCTAAGAAGTACGAGGAGCTAGGTGCGAAGATTCCAAAAGGTGCTCTTTTGGT CGGTCCTCCAGGAACTGGAAAGACCCTTCTAGCAAAGGCAACTGCTGGGGAATCTGGTGTACCTTTTCTATCTATATCTGGTTCAGATTTCATGGAGATG TTTGTTGGTGTTGGACCATCCAGGGTGAGAAACTTGTTTCAAGAAGCAAGACAATGTGCTCCTAGTATCATATTCATTGATGAGATTGATGCGATTGGGA GAGCTAGGGGGCGTGGTGGGTTCTCCGGTTCTAATGATGAGCGGGAAAGTACCCTTAATCAATTGCTTGTAGAAATGGATGGCTTTGGAACTACTGCTGG AGTTGTTGTACTTGCAGGTACAAATCGGCCTGATATTTTAGATAAAGCTCTGTTGAGGCCTGGCCGATTTGACCGCCAAATTTGCATTGACAAACCTGAT ATTAAAGGCCGTGACCAGATATTTCAAATATATTTGAAAAAGATTAAACTTGATCATGAACCATCATATTACTCCCAAAGGCTTGCAGCTCTTACTCCTG GATTTGCTGGAGCAGACATTGCAAATGTTTGTAATGAAGCTGCTCTAATTGCTGCAAGGAGTGAAGGATCACTGGTTACAATGGAACATTTTGAGGCAGC TGTAGATCGAGTCATTGGTGGTTTGGAGAAGAAGAACAAGGTAATAAGCAAGCTTGAACGCAAAACGGTTGCCTATCATGAATCAGGTCATGCTGTTGCT GGCTGGTTTTTGGAACATGCGGAACCACTTTTGAAAGTGACAATCGTCCCACGAGGAACAGCTGCTCTGGGGTTCGCCCAGTATGTTCCAAATGAAAACC TACTCTTCACCAAGGAGCAACTCTTTGATATGACCTGCATGACACTTGGTGGCCGAGCAGCGGAACAGGTTTTGTTGGGGAAAATCTCAACTGGAGCCCA AAATGACTTGGAAAAGGTGACGAAAATGACATACGCCCAAGTTGCAGTGTATGGTTTTAGTGACAAGGTTGGTCTCCTCTCTTTCCCACAAAAGGAGGAC TCGTTTGAGATGACCAAGCCCTACAGCAACGAGACAGGAGCAATTATTGACAGTGAAGTGCGTGAGTGGGTGGGCAAGGCCTATGGCCATACAGTACAAC TCGTAGAAAAGCACAAAGAACAGGTGGCGCAGATTGCAGAGTTGTTGCTCGAGAAGGAAGTTCTCCACCAAGAAGACTTGATTCGAGTTTTGGGCGAGCG GCCATTCAAATCAAGTGAGGTATCAAATTATGACATATTTAAGCAAGGGTTTGAAGAGGAAGAGAAGAAAGTCGAAACCCCAGCTAGTACTACTGACGGG GATGAAGACCAATCATCACCCATAGAGGCTGTACCGGCTTAA
AA sequence Show only first row Show all	>Potri.009G033600.1 pacid=42772608 polypeptide=Potri.009G033600.1.p locus=Potri.009G033600 ID=Potri.009G033600.1.v4.1 annot-version=v4.1 MIFSKLGRSLSRSSRSINTLRAGNGGVLRSSAVINNIEGGFIDGRGGLGLLRGYLTSIGSRGTHNPFLSDLNSILANPRIRRFFSTEAPKKKNYENFYPK GKKEVPKGEKQKSESKENSSNADHDESDFNKGTFMKAFYLLAPLFVVQLLFYPFSFGDGDKQQISFQEFKNRLLEPGLVDHIVVSNKSVAKVYVKSSAQN QTSDDLVQGPVNGVPARGRGGQHKYYFTIGSVDTFEEKLEEAQEALGIDPHNYVPVTYASEMVWYQELMRFAPTLLLLGTLMYMGRRMQGGLGVGGGGGG KGGRGIFNIGKAHVTKADKNSKNKIYFKDVAGCDEAKQEIMEFVHFLKSPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQICIDKPD IKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARSEGSLVTMEHFEAAVDRVIGGLEKKNKVISKLERKTVAYHESGHAVA GWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLFTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQKED SFEMTKPYSNETGAIIDSEVREWVGKAYGHTVQLVEKHKEQVAQIAELLLEKEVLHQEDLIRVLGERPFKSSEVSNYDIFKQGFEEEEKKVETPASTTDG DEDQSSPIEAVPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07510		FTSH10	FTSH protease 10 (.1)		Potri.009G033600 [exp]	0	1
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	2.64	0.8734
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.002G141100 [exp]	6.63	0.8510	Pt-MSJ1.3
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.004G207100 [exp]	11.87	0.7980
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G102800 [exp]	13.52	0.8457	Pt-FIP1.3
AT3G58570			P-loop containing nucleoside t...		Potri.006G196000 [exp]	15.71	0.8221
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.010G126200 [exp]	16.09	0.8034
AT2G47330			P-loop containing nucleoside t...		Potri.002G194600 [exp]	16.37	0.7395
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	17.32	0.7932
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.018G009200 [exp]	17.49	0.8274	Pt-ATCNGC14.1
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.014G157200 [exp]	18.33	0.7979

Compare expression of checked genes

Potri.009G033600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.