Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46640 249 / 6e-81 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) AT5G59570 233 / 1e-74 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT2G40970 144 / 5e-41 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT3G10760 144 / 6e-40 GARP Homeodomain-like superfamily protein (.1) AT5G05090 138 / 2e-38 GARP Homeodomain-like superfamily protein (.1) AT4G16110 104 / 2e-24 GARP ARR2 response regulator 2 (.1) AT3G16857 102 / 1e-23 GARP ARR1 response regulator 1 (.1.2) AT5G58080 94 / 5e-21 GARP ARR18 response regulator 18 (.1) AT2G01760 93 / 5e-21 GARP ARR14 response regulator 14 (.1) AT2G25180 93 / 2e-20 GARP ARR12 response regulator 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243600 [exp] 499 / 2e-178 AT3G46640 233 / 8e-74 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Potri.006G034900 [exp] 139 / 3e-38 AT3G10760 271 / 8e-90 Homeodomain-like superfamily protein (.1) Potri.016G032600 [exp] 138 / 6e-38 AT3G10760 278 / 3e-92 Homeodomain-like superfamily protein (.1) Potri.008G135500 [exp] 112 / 5e-27 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 110 / 3e-26 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G001000 [exp] 100 / 4e-23 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 100 / 6e-23 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.006G262100 [exp] 97 / 5e-22 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G111300 [exp] 95 / 3e-21 AT2G25180 348 / 3e-111 response regulator 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040780 [exp] 205 / 5e-65 AT3G46640 182 / 9e-57 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Lus10010442 [exp] 164 / 5e-48 AT3G10760 271 / 5e-90 Homeodomain-like superfamily protein (.1) Lus10012102 [exp] 159 / 4e-46 AT3G10760 274 / 3e-91 Homeodomain-like superfamily protein (.1) Lus10038996 [exp] 155 / 2e-44 AT3G10760 275 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10027291 [exp] 154 / 9e-44 AT5G05090 266 / 2e-87 Homeodomain-like superfamily protein (.1) Lus10019058 [exp] 101 / 2e-23 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10041020 [exp] 100 / 4e-23 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10005340 [exp] 100 / 8e-23 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10037719 [exp] 100 / 9e-23 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 100 / 1e-22 AT3G16857 603 / 0.0 response regulator 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G035000.1 pacid=42771740 polypeptide=Potri.009G035000.1.p locus=Potri.009G035000 ID=Potri.009G035000.1.v4.1 annot-version=v4.1 ATGGGGGAAGAAGTGAAAATGAGTGAATACGAAATCAACGATGGTGAAGAGAACATCAACGGAGACGATGAAAGAGTTGCAGTGTGGGAGATAGGATTAC CTACACCCGATGATCTCACTCCCTTATCACAAACGTTGATTCCACCTGAACTTGCTTCGGCCTTCAGTATCTTCCCTGAGCCTCACCGTACTCCACTCGA TGTTAACCGCGCTTGTCAGACCACTCTCTCCAATCTCCGCGGTCAATTAAACGCCTTATCGTCTAATAACTTCAAGTCGTTCAACGAAACGACAGGTCAA ACGCACGACCCTATTGTAGTCGATTTAGATAATAAAACCGGAGCGGTGGATCGGGACGGGTCTGGATCCGAAGCGAGGAAGTTGAGGAGGGTTGATTCTG AAGAGGAAGATTCAGCTTTGAGGACCGATAATTCGGCGGAAGACCCGTCGTCTGCGGCGGCGAGGACTTTGAAACGGCCACGGCTCGTGTGGACCCCTCA GTTGCATAAGAGGTTTGTTGACGTGGTCGGCCACTTAGGGATTAAAAACGCGGTTCCGAAAACGATTATGCAGTTGATGAATGTTGAAGGTTTGACTCGC GAGAATGTAGCCAGTCATTTGCAGAAGTACCGGCTTTATTTGAAGAGGATGCAGGGGTTGTCGAGTGAAGGACCTTCTGCTTCTGATCAGTTGTTTGCGT CCACTCCTTTGCCGCAGAGTTTTCCCGAGAGTAGTGATGGCGGCGGCGGCGGAAATGGGAATTTTGGAATCCCAATTCCGATGCCTTATCATCACCCTGC CACGGCGGGTGGGATGATGCCAATGCCAGTATATGGACATATGGGGATGCAAATGGGGAATAACAACGGTCATAATAATAATAGTAGTGATAACCACCAG CATCACCAAGTTAGTATTAATGGTCATCAAAACGGGTATAATGGAAATGTTGTTCATGGTCATATGTTTCAGCAGAGGGATTGGAATGGGAATCATTATG GTTCATACACGCATCATCCACATCAAGTTGCACCTAATGACAACATGTGA
AA sequence Show only first row Show all	>Potri.009G035000.1 pacid=42771740 polypeptide=Potri.009G035000.1.p locus=Potri.009G035000 ID=Potri.009G035000.1.v4.1 annot-version=v4.1 MGEEVKMSEYEINDGEENINGDDERVAVWEIGLPTPDDLTPLSQTLIPPELASAFSIFPEPHRTPLDVNRACQTTLSNLRGQLNALSSNNFKSFNETTGQ THDPIVVDLDNKTGAVDRDGSGSEARKLRRVDSEEEDSALRTDNSAEDPSSAAARTLKRPRLVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEGLTR ENVASHLQKYRLYLKRMQGLSSEGPSASDQLFASTPLPQSFPESSDGGGGGNGNFGIPIPMPYHHPATAGGMMPMPVYGHMGMQMGNNNGHNNNSSDNHQ HHQVSINGHQNGYNGNVVHGHMFQQRDWNGNHYGSYTHHPHQVAPNDNM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Potri.009G035000 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G012750 [exp]	1.00	0.8895
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	2.00	0.8772
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.014G029000 [exp]	4.00	0.8485
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Potri.006G233800 [exp]	4.69	0.8437	ELF3.3
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.007G017800 [exp]	5.19	0.8811
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	5.29	0.8851	Pt-COL11.2
AT4G15733		SCRL11	SCR-like 11 (.1)		Potri.009G162300 [exp]	11.31	0.8068
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	14.66	0.8594
					Potri.003G044301 [exp]	15.42	0.8295
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Potri.001G243600 [exp]	15.87	0.7565

Compare expression of checked genes

Potri.009G035000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.