Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07290 472 / 4e-167 GONST2 golgi nucleotide sugar transporter 2 (.1) AT2G13650 369 / 3e-127 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G77610 54 / 9e-08 EamA-like transporter family protein (.1) AT4G32272 54 / 1e-07 Nucleotide/sugar transporter family protein (.1.2) AT4G31600 53 / 1e-07 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT1G21870 52 / 4e-07 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G19980 50 / 8e-07 GONST4 golgi nucleotide sugar transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062900 [exp] 390 / 2e-134 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.007G106400 [exp] 389 / 4e-134 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.006G270700 [exp] 60 / 8e-10 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 56 / 1e-08 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.005G177200 [exp] 55 / 3e-08 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.018G127400 [exp] 54 / 7e-08 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.002G084500 [exp] 53 / 2e-07 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.006G255400 [exp] 52 / 4e-07 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G071700 [exp] 50 / 1e-06 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005865 [exp] 475 / 4e-168 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 459 / 2e-161 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10024126 [exp] 392 / 2e-135 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005387 [exp] 320 / 1e-107 AT2G13650 394 / 5e-138 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10025645 [exp] 61 / 5e-10 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10029663 [exp] 59 / 3e-09 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10042700 [exp] 58 / 5e-09 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10017759 [exp] 57 / 8e-09 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 56 / 3e-08 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 51 / 6e-07 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.009G044000.1 pacid=42771989 polypeptide=Potri.009G044000.1.p locus=Potri.009G044000 ID=Potri.009G044000.1.v4.1 annot-version=v4.1 ATGTCTGATTTCAAGTTAGATGTAGTTCTAGGCCAGGATTTTCCAGAGCCTGGTTTTAGGCCTGAAAAGGGAAAAACGATTTCAGGTGCTGAAAAGATTA ATGCTGCAGTGTACAAGATTTTTAGTGTCAATTTTGCAGGACGGAGAGCTAAAAGTGACGGGTTCTTTAGAGGGAATGGAGCAGATAGTGACAGTCTCGG TCTCCCAAATGGCGGGGATGGAAAACGTGAACATGGATCAGGAAAAAAATATGGGCCTCTTATATCTGGAACGGCTTACTGCATTTCGTCTTGCGGCATG ATATTGTTGAATAAAATTGCTTTATCAACTTATAATTTCAATGCAGGGATATCACTTATGTTTTACCAAAATTTGATCAGCTGTCTTGTTGTTGCTGTAC TGAGCTTGTCTGGGGTAGTTTCAGTTGAAAAACTCAACTGGAAACTAGTAAGGGTATGGATCCCTGTCAACGTAATCTTTGTTGGCATGCTTGTATCAGG CATGTATAGTTTGAAATACATAAACATAGCGATGGTTACAATATTGAAGAATGTGACAAATATTATAACAGCAATTGGGGAATTGTATATTTTCCGGAAA CATCAGAATCAGAAAGTATGGACTGCCATGTTTTTGATGATCATCTCTGCCATTAGTGGTGGAATCACAGACCTTTCCTTTGATTCCATGGGTTACACAT GGCAAATCATGAATTGTATTTTAACAGCCTGCTACTCGCTTACCCTGCGCAAGGTGATGGACACGGCAAAGCAGTTAACCAGAAGTGGATCTCTTAATGA AATCTCAATGGTCCTACTGAATAATTTGTTATCTCTACCTTTCGGTATCATCTTGATTCTGCTATTCGATGAATGGGAATACATAATAACTACGGATGTG ATTAAATTACCAATGTTTTGGGTTGTTGCAACAGCCAGTGGATTACTTGGACTTGCCATTAGCTTCACCTCCCTGTGGTTCCTACATCAAACTGGCCCCA CAACTTACAGTCTGGTGGGTTCCCTTAACAAGATTCCCTTATCTTTTGCTGGTCTTGTTCTGTTCAAGGTTCCACTCAGTCTACCAAACCTTTTCAGTAT ATTTTTCGGTCTATTTGCTGGAATATTCTTTGCCAGGGCTAAAATGTCCTGA
AA sequence Show only first row Show all	>Potri.009G044000.1 pacid=42771989 polypeptide=Potri.009G044000.1.p locus=Potri.009G044000 ID=Potri.009G044000.1.v4.1 annot-version=v4.1 MSDFKLDVVLGQDFPEPGFRPEKGKTISGAEKINAAVYKIFSVNFAGRRAKSDGFFRGNGADSDSLGLPNGGDGKREHGSGKKYGPLISGTAYCISSCGM ILLNKIALSTYNFNAGISLMFYQNLISCLVVAVLSLSGVVSVEKLNWKLVRVWIPVNVIFVGMLVSGMYSLKYINIAMVTILKNVTNIITAIGELYIFRK HQNQKVWTAMFLMIISAISGGITDLSFDSMGYTWQIMNCILTACYSLTLRKVMDTAKQLTRSGSLNEISMVLLNNLLSLPFGIILILLFDEWEYIITTDV IKLPMFWVVATASGLLGLAISFTSLWFLHQTGPTTYSLVGSLNKIPLSFAGLVLFKVPLSLPNLFSIFFGLFAGIFFARAKMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Potri.009G044000 [exp]	0	1
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.008G136300 [exp]	5.74	0.9127
					Potri.001G028900 [exp]	7.48	0.8603
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.017G044900 [exp]	8.83	0.8329
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	8.94	0.9095
AT1G17030			unknown protein		Potri.001G381400 [exp]	11.18	0.8657
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G149000 [exp]	12.12	0.9064	Pt-AOS.4,CYP74C7-1
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.014G132200 [exp]	14.56	0.8964	Pt-ATGSTF13.1
AT5G20260			Exostosin family protein (.1)		Potri.006G064600 [exp]	14.66	0.8945
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G022100 [exp]	18.33	0.8310
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032400 [exp]	22.27	0.8887

Compare expression of checked genes

Potri.009G044000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.