Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SCL3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 682 / 0 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT3G03450 216 / 6e-64 GRAS RGL2 RGA-like 2 (.1) AT1G14920 213 / 6e-63 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 207 / 4e-61 GRAS RGL1 RGA-like 1 (.1) AT1G63100 204 / 7e-59 GRAS GRAS family transcription factor (.1) AT2G04890 188 / 1e-54 GRAS SCL21 SCARECROW-like 21 (.1) AT2G01570 188 / 2e-53 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT2G29060 152 / 9e-40 GRAS GRAS family transcription factor (.1) AT5G59450 151 / 1e-39 GRAS SCL11 GRAS family transcription factor (.1) AT1G55580 147 / 4e-39 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023500 [exp] 682 / 0 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.003G202100 [exp] 659 / 0 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.004G208700 [exp] 306 / 3e-100 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.001G326000 [exp] 249 / 2e-75 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.003G122400 [exp] 223 / 2e-65 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.010G110700 [exp] 221 / 2e-65 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.005G095100 [exp] 219 / 3e-65 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.001G109400 [exp] 221 / 9e-65 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.008G131700 [exp] 218 / 2e-64 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009717 [exp] 715 / 0 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10022418 [exp] 683 / 0 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10024177 [exp] 608 / 0 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10039562 [exp] 603 / 0 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10019773 [exp] 545 / 0 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10034374 [exp] 283 / 7e-91 AT1G50420 279 / 2e-89 scarecrow-like 3 (.1) Lus10005078 [exp] 273 / 6e-87 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10016596 [exp] 228 / 1e-68 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10017758 [exp] 216 / 5e-64 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10006322 [exp] 212 / 1e-62 AT1G63100 588 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.009G048700.1 pacid=42772032 polypeptide=Potri.009G048700.1.p locus=Potri.009G048700 ID=Potri.009G048700.1.v4.1 annot-version=v4.1 ATGTATCAAGATGATGGATCATCTTCTGTAACATCATCACCTCTCCAAGTTTTCTCCACGATGCCAGTTTCACCTAGCATGGGATCGCCATATCCCTGGG TTAGAGAGCTAAAATCCGAGGAGAGGGGTTTGTATTTGATCCATTTATTGCTCACTTGTGCAAACCACGTTGCCTCTGGTAGCCTTGAAAATGCAGAGAT TGCCCTTAGTCAAATCTCCCATCTAGCCTCTCCTGATGGGGATACCATGCAGCGCATCGCTGCATACTTTGCTGAGGCGCTTGCTCGTAGGATCGTCAAA GCCTGGCCTGGTATTGACAAGGCCCTCAACGCTACTCAAATAACTTTGGTTTCTGAGCAAATCTTAGTTCGCAAACTGTTTTATGATATGTTTCCATTCA TGAAAGTCGCTTTTGTGCTGACGAATCAAGCTATAATTGAAGCCATGGAAGGGGAGAAAATGGTTCATGTAATTGATCTTCACGCAGCTGAACCTGCTCA GTGGATTGCGCTCCTTCAAGCTTTTAGCGTGAGGCCTGAGGGACCACCCCATCTGAGAATCACAGGGATTCATCCGCAGAAAGGGGTATTAGATCAAATG GCTCACAAGCTAATTGAAGAAGCAGAAAAGTTGGATATCCCATTTCAGTTTAATCCCATTGTTAGCAAATTAGAGAATCTTGATATTGAAATATTGCGTG TTAAAACTGGGGAGGCTCTAGCTATCAGTTCAATTCTTCAATTGCATTCTTTTTTGGCCTCTGATGATGAATTGAGGAAGAAATCTCCATCGACATTGAA GAATTCAAATGGAATTAACATGCAAAGAGTCCTTCAAATGAATCAAAACACATTAGGAGAGCTGCTCGAGAAAGACACGGCTAATGGATATAGCCCAAGT CCTGACTCCGCCTCGTCATCACCACTATCTTCAACTGCTTCGGTGAAGATGGATTGCTTCCTTAACTCCCTGTGGGGTTTGTCACCGAAACTCATGGTGG TAACTGAACAGGATTCTAACCACAATGGATCAACTCTTATGGAGAGGCTACTGGAGGCACTATACACTTATGCCGCATTATTTGATTGTTTGGAATCTAC TGTATCTAGAACATCGATGGAAAGGTTGAAGGTGGAGAAGATGCTTTTCGGAGATGAAATAAAGAACATTATAGCATGTGAGGGAGCTGCTAGGAAGGAA AGACATGAAAAACTCGAGAAGTGGATCCAAAGGCTTGATTTGGCTGGGTTTGGAAACGTGTCTTTGAGCTACTACGGTATGCTGCAGGCAAGAAGGTTGT TGCAAGGTTATGGTTGCGATGGGTATAGAATGAAAGAAGAAAATGGAAGTGTAGTAATTTGCTGGCAAGATCGGCCTCTTTTTTCTGTTTCAGCTTGGAG GTGTAGGAAGTAA
AA sequence Show only first row Show all	>Potri.009G048700.1 pacid=42772032 polypeptide=Potri.009G048700.1.p locus=Potri.009G048700 ID=Potri.009G048700.1.v4.1 annot-version=v4.1 MYQDDGSSSVTSSPLQVFSTMPVSPSMGSPYPWVRELKSEERGLYLIHLLLTCANHVASGSLENAEIALSQISHLASPDGDTMQRIAAYFAEALARRIVK AWPGIDKALNATQITLVSEQILVRKLFYDMFPFMKVAFVLTNQAIIEAMEGEKMVHVIDLHAAEPAQWIALLQAFSVRPEGPPHLRITGIHPQKGVLDQM AHKLIEEAEKLDIPFQFNPIVSKLENLDIEILRVKTGEALAISSILQLHSFLASDDELRKKSPSTLKNSNGINMQRVLQMNQNTLGELLEKDTANGYSPS PDSASSSPLSSTASVKMDCFLNSLWGLSPKLMVVTEQDSNHNGSTLMERLLEALYTYAALFDCLESTVSRTSMERLKVEKMLFGDEIKNIIACEGAARKE RHEKLEKWIQRLDLAGFGNVSLSYYGMLQARRLLQGYGCDGYRMKEENGSVVICWQDRPLFSVSAWRCRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.009G048700 [exp]	0	1	Pt-SCL3.1
AT4G12070			unknown protein		Potri.001G017000 [exp]	1.41	0.8322
AT3G15095		HCF243	high chlorophyll fluorescence ...		Potri.011G097700 [exp]	2.00	0.7842
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.002G176300 [exp]	2.00	0.8400	Pt-ATHB.4
AT5G49120			Protein of unknown function (D...		Potri.010G011700 [exp]	4.89	0.8140
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.013G028700 [exp]	6.00	0.7407
AT5G41350			RING/U-box superfamily protein...		Potri.001G101700 [exp]	8.77	0.7197
AT1G27300			unknown protein		Potri.003G170700 [exp]	9.89	0.7332
AT2G31090			unknown protein		Potri.019G090500 [exp]	13.41	0.7254
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014400 [exp]	13.85	0.7166
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.001G174500 [exp]	15.00	0.7502

Compare expression of checked genes

Potri.009G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.