Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ORC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14700 1015 / 0 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 990 / 0 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT1G07270 146 / 5e-37 Cell division control, Cdc6 (.1) AT2G29680 136 / 1e-33 CDC6, ATCDC6 cell division control 6 (.1.2) AT4G39100 51 / 3e-07 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT2G01120 50 / 6e-06 ORC4, ATORC4 origin recognition complex subunit 4 (.1.2) AT5G44800 49 / 1e-05 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT5G24330 48 / 2e-05 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT4G22140 47 / 2e-05 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT3G01460 49 / 3e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250200 [exp] 132 / 3e-32 AT1G07270 626 / 0.0 Cell division control, Cdc6 (.1) Potri.004G159900 [exp] 49 / 3e-06 AT4G39100 323 / 2e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.008G126300 [exp] 50 / 6e-06 AT2G01120 601 / 0.0 origin recognition complex subunit 4 (.1.2) Potri.011G010901 [exp] 49 / 7e-06 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G270601 [exp] 48 / 9e-06 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.013G006000 [exp] 50 / 1e-05 AT1G08060 474 / 6e-136 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2) Potri.015G009632 [exp] 49 / 1e-05 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.012G018300 [exp] 48 / 2e-05 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.004G004900 [exp] 47 / 2e-05 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031279 [exp] 1096 / 0 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10031848 [exp] 1021 / 0 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10031846 [exp] 1020 / 0 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10011627 [exp] 142 / 1e-35 AT2G29680 576 / 0.0 cell division control 6 (.1.2) Lus10009446 [exp] 132 / 4e-32 AT2G29680 584 / 0.0 cell division control 6 (.1.2) Lus10020020 [exp] 50 / 3e-06 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10036223 [exp] 51 / 5e-06 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10015537 [exp] 49 / 1e-05 AT2G19260 86 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015543 [exp] 48 / 1e-05 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10020012 [exp] 48 / 4e-05 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.009G054300.1 pacid=42771758 polypeptide=Potri.009G054300.1.p locus=Potri.009G054300 ID=Potri.009G054300.1.v4.1 annot-version=v4.1 ATGGCAGATACTCCAAAGAAATCTATTCAATCCCCAAGTAAGAAACTCAAAAAACAAGCAACATCTCCTTCTTCTGTTTCAGCCACTCCTCAGACCCCAC GAACACTAGATCCTCCTCGTCGATTCTCTCCCCGTTTATCACTCAAAGTTAATGCCCCGCAAGAACCCATTTCCCCAATTGAAAAACCCACCAAAGATTC ACTCAAAACCCCACCAAATAAATTGGTCGAGGCCCCTCGAGAATCTAGGATTGATTCGTCGAAAACCCGGAGAAATTTGAGTAAAAATGAATTGAAAAGG ACTCCAAGAGGCGAGAAAGACAATGGGTGCTCAAAAACCCCGAAATCAAAGTCTGAGGTGCTTGAGGTTGGTGTTGAATTCTCTCCTGTTTCGCCGGATC AATCGGAGACAAAGAAAAGGAGAAGGGGTGAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAGAATGGTGATAACGAGAGCGATGACATCGAAGAGTAAAAC AGCAAAAACCGATAAAATGAGTGGAAAGAAGAGGGTTTATTATAAGAAAGTGGTGTATGATGAGGGTGAATTTGAGGTTGGAGATGATGTGTATGTGAAG AGGAGAGAGGATGCTAGCTCAGACGATGAGGTCCCAGAATTGGAAGAGTGTCGAGTGTGTTTTAAGGCAGGGAAGGCAGTAATGATTGAGTGTGATGATT GTTTAGGTGGGTTTCATTTGAAATGCTTGAAACCTCCTTTAAAGATAGTGCCTGAAGGAGAATGGATTTGTGGGTTTTGTGAGGCAAGGAAATTGGGTAA AGAGGTTCAGTTACCAAGGCCACCTCCAGGGAAGAAACTGGCTCGAACGTTGAGGGATAAACTTCTTTCTAGTGATTTATGGGCTGCCCATATAGAAAGT ATTTGGAAAGAGGCAGATGGGAGCTATTGGTTTCGGGGACGGTGGTATACGATACCTGAAGAAACTTCTGCTGGACGACAGCCTCACAATCTGAGGAGAG AGCTTTATCAGACAAATGATTTTGCTGAGATTGAGATGGAGTCTATCATTAGGCACTGCTTTGTCTTGAATCCCAAGGAGTATGCAAAGGCCCACGATGA AGGAGATGACATTTTCATGTGCGAATATGAATATGACATACATTGGCACAGTTTCAAGCGTTTAGCTGATATTGACAATGGTGATGAGGAAGGTGAAAAT TCTGACACTGATGAAGATTGGAAATCTTCCAAGGATGCTGAGTCTGATACAGATGAAGATGTAGAATATGAAGAGGAAAAAGTTATAAACTTACAATCTA GAGCATCCTCAGCTCATGAGTTAGCTGCTAACTCACGAAAGGGGAAGTTCTTTGGACTTCAGAAAATTGGGACAAAGAGAATCCCAGAGCACGTGAGATG CCACAAGCAGACTGAACTGGAGAAGGCAAAAGCAGCTCTTGTGTTGGCAAAATTGCCAAAATCTCTACCTTGCAGGAATAAAGAGATGGAGGAGATTAGT GCATTTGTAAAAGGTGCAATCTGTGACAATCAGTGTCTGGGTCGCTGCCTTTATGTTCATGGTGTTCCTGGAACTGGAAAGACAATGAGCGTGCTTGCAG TAATGAGGAACCTGAAGTCTGAAGTTGATGCAGGAAGCATAAGACCATACTGTTTTGTGGATGTTAATGGTCTTAAGTTGGCATCACCAGAGAATATTTA CAGGGCTATATATGAAGCGTTGACTGGACACAGAGTAAGTTGGAAAAAGGCTCTGCATTTGCTAAATGAGCGATTTTCAGATGGAAAGAGAACTGGTAAA GAAGATGACCGGCCTTGTATTCTACTCATTGATGAACTTGATCTTCTTGTGACCAGAAATCAGTCGGTTCTATATAATATTCTTGATTGGCCAACTAAGC CACATTCTAAATTGATTGTGATAGGAATAGCAAATACTATGGATCTTCCAGAAAAGCTGCTTCCTCGTATTTCAAGCCGTATGGGTATACAAAGGCTTTG TTTTGGTCCCTATAATTATCAACAGCTTCAGGAAATCATTTCAAGTCGCCTTAAAGGAATCAATGCATTTGAAAAGCAAGCTATAGAATTTGCTTCAAGG AAGGTAGCAGCTATTTCAGGAGATGCACGTCGTGCTCTAGAAATTTGCAGGCGTGCAGCTGAAATTGCAGATTACCAAATTAAGAAATTGAGCTCCAATC ATAATCCAGCTCCAGAAGGAAAGGGCCTTGTCGGTATGTCAGCAGTTGAAGCAGCCATTCAGGAAATGTTCCAGGCGCCTCATATTCAAGTAATGAGAAG TTGTTCCAAACTAAGTAAAATTTTCTTGGCAGCTATGGTGTACGAGCTGTATAAAACAGGGATGGCTGAGACATCCTTTGAAAAGTTGGCAATGACTGTT TCATGTATTTGTACAAGCAATGCAGAAGCATTTCCTGGTTGGGACATCCTCTTGAAACTTGGCTGCATGCTAGGTGAAAGCAGGATAATTCTATGTGAAC CAGGAGCTAGACACAGTTTGCAGAAGTTGCAGCTCAATTTTCCAAGTGATGATGTAGCTTTTGCATTGAAAGACAGCAAGGAGATACCCTGGTTGGCCAA GTATTTATGA
AA sequence Show only first row Show all	>Potri.009G054300.1 pacid=42771758 polypeptide=Potri.009G054300.1.p locus=Potri.009G054300 ID=Potri.009G054300.1.v4.1 annot-version=v4.1 MADTPKKSIQSPSKKLKKQATSPSSVSATPQTPRTLDPPRRFSPRLSLKVNAPQEPISPIEKPTKDSLKTPPNKLVEAPRESRIDSSKTRRNLSKNELKR TPRGEKDNGCSKTPKSKSEVLEVGVEFSPVSPDQSETKKRRRGEEKEKEKEKERMVITRAMTSKSKTAKTDKMSGKKRVYYKKVVYDEGEFEVGDDVYVK RREDASSDDEVPELEECRVCFKAGKAVMIECDDCLGGFHLKCLKPPLKIVPEGEWICGFCEARKLGKEVQLPRPPPGKKLARTLRDKLLSSDLWAAHIES IWKEADGSYWFRGRWYTIPEETSAGRQPHNLRRELYQTNDFAEIEMESIIRHCFVLNPKEYAKAHDEGDDIFMCEYEYDIHWHSFKRLADIDNGDEEGEN SDTDEDWKSSKDAESDTDEDVEYEEEKVINLQSRASSAHELAANSRKGKFFGLQKIGTKRIPEHVRCHKQTELEKAKAALVLAKLPKSLPCRNKEMEEIS AFVKGAICDNQCLGRCLYVHGVPGTGKTMSVLAVMRNLKSEVDAGSIRPYCFVDVNGLKLASPENIYRAIYEALTGHRVSWKKALHLLNERFSDGKRTGK EDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGINAFEKQAIEFASR KVAAISGDARRALEICRRAAEIADYQIKKLSSNHNPAPEGKGLVGMSAVEAAIQEMFQAPHIQVMRSCSKLSKIFLAAMVYELYKTGMAETSFEKLAMTV SCICTSNAEAFPGWDILLKLGCMLGESRIILCEPGARHSLQKLQLNFPSDDVAFALKDSKEIPWLAKYL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Potri.009G054300 [exp]	0	1	Pt-ORC1.1
AT2G37960			unknown protein		Potri.006G094600 [exp]	7.54	0.8805
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	11.40	0.8618
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	14.42	0.8400
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Potri.012G018300 [exp]	16.15	0.8503	SDG933
AT5G54970			unknown protein		Potri.006G052300 [exp]	16.61	0.8311
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Potri.001G225600 [exp]	18.49	0.8615	SYN3.1
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Potri.015G009632 [exp]	20.49	0.8490
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	21.26	0.8561
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Potri.011G083700 [exp]	23.32	0.8530
AT1G71760			unknown protein		Potri.002G062800 [exp]	23.66	0.8545

Compare expression of checked genes

Potri.009G054300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.