Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08500 208 / 5e-68 AtENODL18 early nodulin-like protein 18 (.1) AT3G27200 52 / 2e-08 Cupredoxin superfamily protein (.1) AT5G15350 50 / 1e-07 AtENODL17 early nodulin-like protein 17 (.1) AT3G17675 47 / 6e-07 Cupredoxin superfamily protein (.1) AT2G25060 48 / 9e-07 AtENODL14 early nodulin-like protein 14 (.1) AT4G31840 47 / 2e-06 AtENODL15 early nodulin-like protein 15 (.1) AT5G26330 47 / 3e-06 Cupredoxin superfamily protein (.1) AT2G31050 46 / 5e-06 Cupredoxin superfamily protein (.1) AT3G20570 44 / 3e-05 AtENODL9 early nodulin-like protein 9 (.1) AT1G45063 42 / 0.0002 copper ion binding;electron carriers (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G273000 [exp] 365 / 1e-129 AT1G08500 213 / 1e-69 early nodulin-like protein 18 (.1) Potri.002G150600 [exp] 115 / 9e-32 AT1G08500 97 / 2e-24 early nodulin-like protein 18 (.1) Potri.014G072700 [exp] 101 / 2e-26 AT1G08500 92 / 1e-22 early nodulin-like protein 18 (.1) Potri.006G259101 [exp] 55 / 2e-09 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 52 / 2e-08 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 52 / 2e-08 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 52 / 2e-08 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G156100 [exp] 50 / 1e-07 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 50 / 1e-07 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036067 [exp] 230 / 7e-76 AT1G08500 221 / 1e-72 early nodulin-like protein 18 (.1) Lus10009231 [exp] 110 / 1e-28 AT1G08500 117 / 4e-31 early nodulin-like protein 18 (.1) Lus10037998 [exp] 100 / 1e-25 AT1G08500 101 / 1e-26 early nodulin-like protein 18 (.1) Lus10007028 [exp] 56 / 2e-09 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 55 / 2e-09 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10041570 [exp] 54 / 5e-09 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10022350 [exp] 52 / 2e-08 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10035911 [exp] 52 / 6e-08 AT5G20230 95 / 3e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10007025 [exp] 51 / 9e-08 AT2G32300 101 / 3e-27 uclacyanin 1 (.1) Lus10025752 [exp] 51 / 1e-07 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF02298 [poplar] [flax] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Potri.009G067300.1 pacid=42771219 polypeptide=Potri.009G067300.1.p locus=Potri.009G067300 ID=Potri.009G067300.1.v4.1 annot-version=v4.1 ATGGAACAGATGACAGGCCTTCTATTCCTCTCCTTCTCTAGCCTTATTCTACTGTCTTTTTCAGGATCTGTCGATGCTTACAAGAACTACACAGTGGGTG ACTCCTTGGGTTGGTATGACACCACTGTTAAGTCCAATGTCAATTACCAAAAATGGGCTGATGGCAAGAACTTCAGCTTGGGAGATTTCCTCATTTTCAA CACGGATAATAACCATTCAGTAGTTCAAACATACAATTTCACCACATACAAGCTGTGTGATTATGACAATTCCGTAGACAATGTCACCGTAGAATGGTCA TCCGCCAATCCATCCAACACTCTCACGCAGGGAGTCACGGTGGCAGTTCCTCTGCTCAAGGAAGGACCAACCTATTTCTTCTCTGGGGATTATGATGGGG AGCAATGTGATAACGGTCAGCATTTCAAACTAACCGTGTCTCATGGAAAAGGGTTGCCGGACAGTCTGAAAGACCCATCCGATCAGGCCCCGGCCCCAAA TGCTGCCGATTATGACTCGACGCCAGATACTACTGTGCCCTTTGACTTAAATAATCCTCATGATCAGGACACTGATGTTAAGAAGGATTCTGGATCTATT TCATTATATGGGAAATTCCTAGACATGAAATTGCATGGGATTTTGCTTTTGTTAGGGATTGTTTACTTGTTTTGA
AA sequence Show only first row Show all	>Potri.009G067300.1 pacid=42771219 polypeptide=Potri.009G067300.1.p locus=Potri.009G067300 ID=Potri.009G067300.1.v4.1 annot-version=v4.1 MEQMTGLLFLSFSSLILLSFSGSVDAYKNYTVGDSLGWYDTTVKSNVNYQKWADGKNFSLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDNSVDNVTVEWS SANPSNTLTQGVTVAVPLLKEGPTYFFSGDYDGEQCDNGQHFKLTVSHGKGLPDSLKDPSDQAPAPNAADYDSTPDTTVPFDLNNPHDQDTDVKKDSGSI SLYGKFLDMKLHGILLLLGIVYLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.009G067300 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.002G145100 [exp]	1.73	0.9822
AT4G21780			unknown protein		Potri.011G136500 [exp]	3.74	0.9818
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G144100 [exp]	5.74	0.9805
AT2G01918		PQL3	PsbQ-like 3 (.1)		Potri.017G129700 [exp]	6.00	0.9728
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.005G063300 [exp]	6.00	0.9785
AT4G10340		LHCB5	light harvesting complex of ph...		Potri.019G063101 [exp]	7.41	0.9779
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.017G114600 [exp]	9.16	0.9713
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	9.48	0.9769
AT1G74730			Protein of unknown function (D...		Potri.012G070600 [exp]	9.89	0.9760
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.006G254200 [exp]	11.83	0.9720	PSAK.2

Compare expression of checked genes

Potri.009G067300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.