Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 85 / 2e-17 GRAS GRAS family transcription factor (.1) AT3G54220 78 / 4e-15 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G48150 74 / 7e-14 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT5G41920 73 / 9e-14 GRAS GRAS family transcription factor (.1) AT3G50650 73 / 1e-13 GRAS SCL7 GRAS family transcription factor (.1) AT1G55580 73 / 1e-13 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT1G63100 73 / 1e-13 GRAS GRAS family transcription factor (.1) AT3G03450 71 / 5e-13 GRAS RGL2 RGA-like 2 (.1) AT4G37650 71 / 5e-13 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G60630 71 / 6e-13 GRAS ATHAM2, LOM2 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G122500 [exp] 340 / 1e-111 AT3G03450 85 / 3e-17 RGA-like 2 (.1) Potri.001G280332 [exp] 188 / 3e-57 ND / Potri.005G175300 [exp] 106 / 1e-24 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 97 / 3e-21 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.005G123800 [exp] 92 / 8e-20 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.007G026300 [exp] 91 / 3e-19 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.003G122400 [exp] 88 / 3e-18 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.005G190300 [exp] 87 / 3e-18 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.002G036100 [exp] 82 / 2e-16 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040166 [exp] 325 / 1e-99 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10002204 [exp] 283 / 9e-90 AT3G03450 87 / 7e-18 RGA-like 2 (.1) Lus10012236 [exp] 280 / 8e-89 AT3G03450 83 / 1e-16 RGA-like 2 (.1) Lus10022664 [exp] 254 / 3e-79 AT4G08250 81 / 3e-16 GRAS family transcription factor (.1) Lus10002205 [exp] 250 / 6e-77 AT3G60630 71 / 1e-12 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10012237 [exp] 207 / 1e-62 AT3G60630 66 / 2e-11 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10008316 [exp] 103 / 2e-23 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 102 / 2e-23 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10027123 [exp] 88 / 1e-18 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10006322 [exp] 84 / 3e-17 AT1G63100 588 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.009G075500.2 pacid=42771775 polypeptide=Potri.009G075500.2.p locus=Potri.009G075500 ID=Potri.009G075500.2.v4.1 annot-version=v4.1 ATGTCCCATCCAGAGGAACAGAAATATTCCCTAATTCCGGAGTCTAATATTACTTTTGATGATCCATTGACGGTAAGAGAAATTGAGGATATAAATGATT GGTTGGCGAGTGAGAACAGGGGTGCTATGCAAAACTTCCCTGGAGATGATGCAGGGAGCCTGCTTGTATCTCCACCATCGAGGGAGGCATCTATAGACAC ACTGACGAATCAAACATCCTTGGTTCTGCCCGGTATTGGCATGGAATTTGATAACCAATTGATGATTCTCCATCTGCTCAAGGCTTATGGAGAGGCTGCG GAGATGGAGATGAAAGAGTTAGCTGAAAAAATTATGAGTCGGTTAAAAGAGATGGCATGCCCTATTGGTTCAACCCTGGAGCGACTTGCTTATTATTTGA TTCAAGCACGGGAAGGGGAAGTGGACTTTCTATGGCAAGAAGCAAGCAAGAATTATGAGGCTGCCTTTAAAGCATTCTATCAGATATTTCCCTACGGGAG GTTTGCTCATTTTACTGCCAATTCTGTAATACTAGAAGCCATCCCTGAAGAAGCTGACATAGTGCACATAGTTGACTTTGACATTGGTCAAGGTGTGCAA TGGCCTCCAATGATCGAAACACTTGCGAGGCGAGGCAAAAGAATGGTGAGATTGACTGCAATAAAATGGGAGGAGGAAGAGGATTGCAGTGGTGTTGGTT CCTCGAGGAGTTTTGAGGAGACGAAAATGCGGTTATATGAACACGCACAAACATTTGGTTTGAGATTGAAAATGGAGGAGATGGACATGGAGGTTTTGGT TAGTGAGATGAAGAAGACAAAGAAAAGAGGTGGAAGAGGGGAATGGTTAGCCTTCAATTGCATGGTGGGTCTCCCTCACATGGGGAAAGGGAGGAGTGCC AGGAGTCTTGGGGAGTTTCTAAGGTTAGCTAAAGATTCAATCACCCTCAATACTGATGGTGGTAGTGGTACTAGGGGAACTATAACTATTGGAGATGGGA TTGGTTGGGGCATGGAAGTGAAGGAGCAGAAAGGATACGGCTCTGTTTTTGCAGGGCAGCTGGTTCAGTTCATGGCGTTGATAGAATCAATGGACTGTCA TTTCCCTGACCATCTAAGAGAAGCAAGAATAGCCATGGAATGCGTGTTTTTGATACCTTATGTTTCTTCTTCTTTTGGCTTGCAAATGTGGGATGATATT GCTAAAGAAAGCAGGGCACTCTCAGAGGTAGGGTTGGTGGCCTGGGAAATGAGAAAAGATAATCTTCTAGAGGCCAGGGAATTGATCAGAGAAACAGAAA GCTTCTACTGTGTGAACATCGAAGGAGTGAAGGAGAACCAAATGGTACTGAGCTACATGGAAGTTCCTCTGGTGAAGGTTTCAAGCTGGACATAA
AA sequence Show only first row Show all	>Potri.009G075500.2 pacid=42771775 polypeptide=Potri.009G075500.2.p locus=Potri.009G075500 ID=Potri.009G075500.2.v4.1 annot-version=v4.1 MSHPEEQKYSLIPESNITFDDPLTVREIEDINDWLASENRGAMQNFPGDDAGSLLVSPPSREASIDTLTNQTSLVLPGIGMEFDNQLMILHLLKAYGEAA EMEMKELAEKIMSRLKEMACPIGSTLERLAYYLIQAREGEVDFLWQEASKNYEAAFKAFYQIFPYGRFAHFTANSVILEAIPEEADIVHIVDFDIGQGVQ WPPMIETLARRGKRMVRLTAIKWEEEEDCSGVGSSRSFEETKMRLYEHAQTFGLRLKMEEMDMEVLVSEMKKTKKRGGRGEWLAFNCMVGLPHMGKGRSA RSLGEFLRLAKDSITLNTDGGSGTRGTITIGDGIGWGMEVKEQKGYGSVFAGQLVQFMALIESMDCHFPDHLREARIAMECVFLIPYVSSSFGLQMWDDI AKESRALSEVGLVAWEMRKDNLLEARELIRETESFYCVNIEGVKENQMVLSYMEVPLVKVSSWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08250	GRAS		GRAS family transcription fact...		Potri.009G075500 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G120532 [exp]	2.44	0.7858
					Potri.015G034125 [exp]	6.78	0.7926
AT2G23140			RING/U-box superfamily protein...		Potri.006G251000 [exp]	10.24	0.7274
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Potri.007G101700 [exp]	13.41	0.6840
					Potri.003G152800 [exp]	26.98	0.6959
AT3G22380		TIC	time for coffee (.1.2)		Potri.003G029500 [exp]	45.07	0.6922
					Potri.012G124700 [exp]	94.56	0.6458
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G060300 [exp]	103.92	0.6454	RGP3.3
					Potri.011G155001 [exp]	159.85	0.6082
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113200 [exp]	194.45	0.6008

Compare expression of checked genes

Potri.009G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.