Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 256 / 4e-72 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 210 / 3e-56 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G07040 147 / 4e-36 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G46530 139 / 1e-33 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G59620 139 / 1e-33 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G10920 130 / 4e-31 LOV1 NB-ARC domain-containing disease resistance protein (.1.2) AT3G50950 130 / 6e-31 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT4G27220 130 / 7e-31 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 127 / 5e-30 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 126 / 1e-29 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G005900 [exp] 483 / 3e-154 AT3G14470 374 / 2e-111 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 375 / 1e-115 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 375 / 9e-115 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 372 / 8e-114 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 360 / 3e-109 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 350 / 9e-106 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136400 [exp] 339 / 8e-103 AT3G14470 413 / 5e-128 NB-ARC domain-containing disease resistance protein (.1) Potri.017G133666 [exp] 338 / 4e-102 AT3G14470 416 / 7e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 334 / 7e-100 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 297 / 4e-86 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 287 / 5e-82 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 286 / 6e-82 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 282 / 2e-80 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 282 / 4e-80 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 281 / 9e-80 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 277 / 1e-78 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 277 / 2e-78 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 273 / 3e-77 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10042117 [exp] 237 / 1e-65 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.009G081000.2 pacid=42770772 polypeptide=Potri.009G081000.2.p locus=Potri.009G081000 ID=Potri.009G081000.2.v4.1 annot-version=v4.1 ATGGAAGAGAGGAAGATTGTACAACAGTTATTATCTTGTGAAGCTACCCAGGAAGGATATCCAACAGTTATTCCAAAAACCAGTATTGGGGGCATTGGCA AGACAAGTCGTGCTCGATTGGCATATAATGATGAGAGGGTAACACAGCACTTCGATGTTAAAATTTGGGTGTTCGTGTCTGAAATTTTTTATGCAAAGAT GATCACGAAGACAGTTACAGAGTCTGCTACAAAGAAAATATGCAAAAAAGAGATGGATGCGCTTCAGTCCAAGCTGTGGGGTTTGTTGCATAGAAAGAGA TACCTCATTGTGCTAGATGATGCTTGGAGTAAGGATCACATTGAGTGGGGCAAGCTAAGGCCTTTGTTGAGAGGGGGTCTTGCTGGAAGTACACTCATCA TCACTTCTCGTAGTAAAAAAGTCGCTATGATGATGGACTCCCCAATCTTCCCTTACCATTTGAAGGGTTTGGATGAAGATGATTGCTGTGCTTTGTTCAG GCAACGGGCTTTTCGGAGAGGAGAAGAAGAGCAGGATCCAAATCTTTTGCCAATAGGAAAGCAGATTGCCAGAAAATTTGGAGGGCTGCCACTAGCTGCA AAAACTTTGGGAAGCTTGACGCGCTTCGAAAGAGAGGATAGAGAGTGGTTATTAGTGGAAAATAGTGAACTTTGGAGTTTAAATGTAAACCATGGTGGAA TTTTACCTTCCCTGATGCTAAGTTATTATCATCTACCAATACACCTCAAACATTGCTTTGCTTTCTGCTCAATATTTCCAAAAGCTTACGAAATCAAGGA GAAAGGGGTCAAACCACCAGAAGATATTGGCAATGAGTACTTCAAGGATTTGTTGTGGATGGTTTTCTTTCAAGATGCAGAAAAATATGATGATGGCAAC ATGAATTGCTACAAAATGCATGATATCATTCATGATCTTGCACGATATGTTTCAGGGGAAGAATTTATGATAGTGGAGCATGATCTTCTACCATTTGGCC TGGTCCAAACTTGCCACTCATGTAGCGTAGGTGAAGTTGGATCATTTACAGTTCCAGAAGCATTGTATGAGGCAGAACAACTGCGGACACTCTTATTGGT AGGGGTGGAGGGCTTGAAAGACATTCCCTTCAAACTGTTTTCGAGTTTCAAATACTTGCGCGTGCTAGATCTGAACAGTTGTGGCTTAGCAATTTTTCCA CCAAGCGTAGAGAGGCTTCGTCATTTGCAAACTTTGAACCTGTATGGCTGCACTGGTCTTGCACAATTGCCTGACTTGACAACAATGGCTGATCTTCGCC ATCTTATTTTAACTGGACGTGACTGTTTACCCTTGATTCCTTTCAGTATCAGAAAGTTGCATCTACTTCAGGCATTGCCAAAATATTTTGTACATAGGGA TTACAACTGCACCCGCCACTTGGCACATTTAGATCTCTGCGCATTAACATCAATTCCATTTAATATTGAAGAGTTGCCTCAGCTTCAAACATTGCCAACG TTTATTGTAGACGGCTACTATAACGGCATCCAGCATTTGGAACATGTAAATCTTCACGGTGAGTTGAAAATTAAACACTTGCAGAATGTTTGGAATGCAC ATTTGTTGGGACTGCATTGGGAAGAGAGAGATAATCGAGAAGAATGTAACGACAACCTGATGTCCATTCTTGAAGCCCTGCAACCTCATCAAAATGTTAA ACAACTAGTTATAGAAGTGATTAGTTTGACTAACTGTAGAAAATGTGAGCGTCTTCCCGCCCTTGGGAATCTTACGTTACTTAAGACACTCTCTCTTTGT GGAATGGATGGCTTGAAACCATTTCCATCACTTGAAGAACTAAGCTTGAGAGGCTTTCCAAACCTGAAAGAATGGTCAACTGCAAATGATGGAGATGCAT TCTCTAAATTGAGGAAACTGATTGTTGACAACTGTCCCATATTAATTAATATGCCACGGTTTCCGTCTCTTCAACATTTGGAGCTACGGAATTGCAACCA AGCAATGTTGTCAATTGCAAATTTCACTTCCTTATTGACCCTTGCTATAGAAAGAATCCCAGAAATTCACTCTATCTCAGGAAGTTTTCTTGCTGGAAAC ACGTTTCTGACATCTCTGGAGATCATCTCTTGCCCCAAACTCATTTTGATTCCATCAGAGCTGGGGAGCCTCACAGCTTTAAAATCCTTGACAATTCGAT GGTGTGAAGAGCTTATGTCTCTGCCGCAAAGTTTGCAGAACCCCAATGCTTTAGAGTCATTGGAGATTAGTTTAAGTTCGCTGCGGACTTTATCCATCGA AAACTGCAATAGTTTGACTTCTCATTTAACTATTATGTATTGCCCGAGTCTTGGTTCTTTGCCTGACGGTTTGCTACACCTCTTTGCCCTGCGAAGTTTG ACCATCTTAAGCTGTCCTCAACTTTTATCTCTACCAGAGGAGCTTAAATAG
AA sequence Show only first row Show all	>Potri.009G081000.2 pacid=42770772 polypeptide=Potri.009G081000.2.p locus=Potri.009G081000 ID=Potri.009G081000.2.v4.1 annot-version=v4.1 MEERKIVQQLLSCEATQEGYPTVIPKTSIGGIGKTSRARLAYNDERVTQHFDVKIWVFVSEIFYAKMITKTVTESATKKICKKEMDALQSKLWGLLHRKR YLIVLDDAWSKDHIEWGKLRPLLRGGLAGSTLIITSRSKKVAMMMDSPIFPYHLKGLDEDDCCALFRQRAFRRGEEEQDPNLLPIGKQIARKFGGLPLAA KTLGSLTRFEREDREWLLVENSELWSLNVNHGGILPSLMLSYYHLPIHLKHCFAFCSIFPKAYEIKEKGVKPPEDIGNEYFKDLLWMVFFQDAEKYDDGN MNCYKMHDIIHDLARYVSGEEFMIVEHDLLPFGLVQTCHSCSVGEVGSFTVPEALYEAEQLRTLLLVGVEGLKDIPFKLFSSFKYLRVLDLNSCGLAIFP PSVERLRHLQTLNLYGCTGLAQLPDLTTMADLRHLILTGRDCLPLIPFSIRKLHLLQALPKYFVHRDYNCTRHLAHLDLCALTSIPFNIEELPQLQTLPT FIVDGYYNGIQHLEHVNLHGELKIKHLQNVWNAHLLGLHWEERDNREECNDNLMSILEALQPHQNVKQLVIEVISLTNCRKCERLPALGNLTLLKTLSLC GMDGLKPFPSLEELSLRGFPNLKEWSTANDGDAFSKLRKLIVDNCPILINMPRFPSLQHLELRNCNQAMLSIANFTSLLTLAIERIPEIHSISGSFLAGN TFLTSLEIISCPKLILIPSELGSLTALKSLTIRWCEELMSLPQSLQNPNALESLEISLSSLRTLSIENCNSLTSHLTIMYCPSLGSLPDGLLHLFALRSL TILSCPQLLSLPEELK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.009G081000 [exp]	0	1
AT1G55800			Domain of unknown function (DU...		Potri.016G003133 [exp]	6.32	0.8077
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.010G212800 [exp]	6.48	0.8568
AT1G32583			unknown protein		Potri.010G246900 [exp]	12.72	0.8176
					Potri.010G212850 [exp]	24.89	0.7714
					Potri.018G003201 [exp]	26.15	0.7719
					Potri.008G224228 [exp]	27.71	0.7736
					Potri.004G063101 [exp]	29.73	0.7705
AT5G56320		ATHEXPALPHA1.5,...	EXPANSIN 14, expansin A14 (.1)		Potri.003G223501 [exp]	30.85	0.7705
					Potri.008G224246 [exp]	31.81	0.7712
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.001G113800 [exp]	33.74	0.7685

Compare expression of checked genes

Potri.009G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.