Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49960 727 / 0 Xanthine/uracil permease family protein (.1) AT5G62890 678 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 661 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 632 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT5G49990 620 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 575 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 566 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 553 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 466 / 1e-159 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 372 / 9e-125 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G077400 [exp] 682 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 682 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 680 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 672 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.014G157800 [exp] 571 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 564 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 561 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 557 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 496 / 1e-171 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033773 [exp] 732 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 687 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 685 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 681 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 659 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 655 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 611 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10036355 [exp] 578 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 570 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 551 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.009G086800.1 pacid=42771612 polypeptide=Potri.009G086800.1.p locus=Potri.009G086800 ID=Potri.009G086800.1.v4.1 annot-version=v4.1 ATGGCAGTGGGAGGCGCTGCCAAGGTTGATGAGTTCGTTCCATTTCCTGTTAAAGACCAGCACCCTGGCGTTGATTTCTGCGTCTCCAGTTCTCCTCCTT GGCCTGAAGCAATACTACTTGGATTTCAGCATTATCTGGTGATGCTCGGGACTAGTGTGATCATCCCTTCCATAGTCGTTCCTTTGATGGGCGGTGGCAA TGTGGAGAAGGCTGAGATGATTAACACATTGGTCTTCGTGGCGGGGATAAACACTCTTTTGCAGACTTGGCTCGGCACTCGGCTTCCTGTGGTTATTGGA GGATCCTATGCTTTTATTATCCCCACAATTACCATTGCTTTATCTACTAACAGTAGTACTAATGTCATATTCCTTAGCCCACGGCAGAGGTTTAAGCAAT CTATGAGAGCGGTACAAGGAGCAATTATTATCGCTTCATTCTTTCAAATGATAATTGGTTTCCTTGGATTCTGGAGGATTTTTGCGAGATTTCTCAGCCC TCTTGCTGCAGTACCTCTTGTGATTCTCACTGGACTAGGGCTTTATGCACGTGGATTCTCACAACTGGCGAAATGTGTGGAAATTGGACTCCCAGCACTT CTTCTGGTGGTCTTTATATCTCAGTATGTTCCTCATATGATGAAATCATGGAGCAGCATGTACAGTCGGTATGCAGTCCTTTTCTCAGTTGCAGTTGTGT GGGCATATGCAGCAGTTTTGACTGTTGCTGGTGCATATAATAATAAACCTCCAAACACCCAACTTAGCTGTCGTGTTGATCGTTCTGGACTCATTGGTGC TGCTCCATGGATAAAGTTTCCATATCCATTTCAATGGGGGGGTCCTACTTTTAATGCTGGCAATGTTTTTTCCATGATGGCTGCTTGTTTGGTTGCAGTT ATTGAGTCTACTGGTACCATTATTGCAACATATCAATATGGGAGTGCCACTCATCTGCCTCCTTCTGTATTCGGCCGCGGTATTGGATGGCTGGGAATTG GAACTTTGCTGGATGGATTGTTTGGTACAGGAAATGGGTCCACTGCTTCAGTTGAAAATGCAGGTCTTGTGGGATTAACTCGAGTTGGAAGTCGAAGAGT CATTCAAATATCAGCCGGCTTTATGCTTTTATTTTCTGTGTTAGGAAAATTTGGGGCTGTTCTTGCTTCTATACCATTGCCAATTATGGCAGCTCTTTAC TGTGTCCTCTTCGCCTATGTTGCTTCTGCTGGTCTGGGACTTCTCCAGTTCTGCAACCTGAATAGCTTCAGAACAAAGTTCATCCTTGGCTTTTCTCTCT TCTTGGGCCTTTCTGTGCCACAGTACTTCAATGAGTACCTTTTGGTTTCTGGTCGTGGCCCTGTTCACACTGGAGCCACCTGGTTCAACGATGCAATTCA AGTGATCTTCTCGTCCCCAGCAACAGTGGCAATTATAGTTGCTTTTTTCTTGGACTGCACTCACAGTCGGGGGCACAGCACAACCCGCCGAGACAGTGGC AGGCACTGGTGGGCAAAGTTCAGATATTTTAGTCAAGACACCAGGACCGAGGAATTCTATGCCTTACCTTGGAACCTTAACAGGTTTTTCCCTTCATTCT AA
AA sequence Show only first row Show all	>Potri.009G086800.1 pacid=42771612 polypeptide=Potri.009G086800.1.p locus=Potri.009G086800 ID=Potri.009G086800.1.v4.1 annot-version=v4.1 MAVGGAAKVDEFVPFPVKDQHPGVDFCVSSSPPWPEAILLGFQHYLVMLGTSVIIPSIVVPLMGGGNVEKAEMINTLVFVAGINTLLQTWLGTRLPVVIG GSYAFIIPTITIALSTNSSTNVIFLSPRQRFKQSMRAVQGAIIIASFFQMIIGFLGFWRIFARFLSPLAAVPLVILTGLGLYARGFSQLAKCVEIGLPAL LLVVFISQYVPHMMKSWSSMYSRYAVLFSVAVVWAYAAVLTVAGAYNNKPPNTQLSCRVDRSGLIGAAPWIKFPYPFQWGGPTFNAGNVFSMMAACLVAV IESTGTIIATYQYGSATHLPPSVFGRGIGWLGIGTLLDGLFGTGNGSTASVENAGLVGLTRVGSRRVIQISAGFMLLFSVLGKFGAVLASIPLPIMAALY CVLFAYVASAGLGLLQFCNLNSFRTKFILGFSLFLGLSVPQYFNEYLLVSGRGPVHTGATWFNDAIQVIFSSPATVAIIVAFFLDCTHSRGHSTTRRDSG RHWWAKFRYFSQDTRTEEFYALPWNLNRFFPSF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49960			Xanthine/uracil permease famil...		Potri.009G086800 [exp]	0	1
AT4G36790			Major facilitator superfamily ...		Potri.007G030800 [exp]	1.00	0.9763
AT5G44670			Domain of unknown function (DU...		Potri.003G156600 [exp]	3.00	0.9673
					Potri.003G083000 [exp]	3.16	0.9732
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.001G373300 [exp]	4.89	0.9287
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.001G109300 [exp]	6.63	0.9551
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012200 [exp]	7.07	0.9536	FLA14.12
AT2G28680			RmlC-like cupins superfamily p...		Potri.008G102900 [exp]	7.14	0.8486
AT2G22620			Rhamnogalacturonate lyase fami...		Potri.014G004500 [exp]	8.48	0.9430
					Potri.002G193400 [exp]	9.48	0.9046
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	11.40	0.9154	FLA14.5

Compare expression of checked genes

Potri.009G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.