Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SMH901
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49950 277 / 6e-93 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT5G67580 191 / 3e-59 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT3G49850 179 / 2e-54 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G72740 121 / 2e-32 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17520 112 / 7e-29 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G54260 54 / 2e-08 winged-helix DNA-binding transcription factor family protein (.1) AT2G18050 51 / 6e-08 HIS1-3 histone H1-3 (.1.2) AT1G72650 51 / 7e-07 MYB TRFL6 TRF-like 6 (.1.2) AT2G30620 48 / 1e-06 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G17460 46 / 3e-05 MYB TRFL3 TRF-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G292700 [exp] 427 / 3e-152 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.014G004900 [exp] 249 / 4e-82 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.007G005000 [exp] 250 / 6e-82 AT5G67580 212 / 1e-66 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.006G147400 [exp] 132 / 1e-36 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.018G066300 [exp] 125 / 3e-34 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.002G199900 [exp] 58 / 6e-10 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G116600 [exp] 53 / 3e-08 AT2G18050 117 / 3e-33 histone H1-3 (.1.2) Potri.007G014200 [exp] 50 / 3e-07 AT2G18050 109 / 2e-30 histone H1-3 (.1.2) Potri.013G154500 [exp] 50 / 1e-06 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011546 [exp] 173 / 3e-52 AT5G67580 199 / 2e-62 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10019260 [exp] 169 / 3e-50 AT5G67580 201 / 5e-63 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10025203 [exp] 160 / 2e-47 AT1G49950 175 / 3e-53 telomere repeat binding factor 1 (.1.2.3) Lus10012092 [exp] 158 / 6e-47 AT1G49950 182 / 3e-56 telomere repeat binding factor 1 (.1.2.3) Lus10014653 [exp] 166 / 7e-46 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033775 [exp] 164 / 2e-45 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030935 [exp] 102 / 4e-25 AT1G72740 171 / 5e-51 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10027621 [exp] 100 / 6e-25 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10040111 [exp] 95 / 2e-22 AT1G72740 135 / 6e-38 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10022001 [exp] 61 / 1e-10 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] HTH PF00538 [poplar] [flax] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Potri.009G087000.4 pacid=42770940 polypeptide=Potri.009G087000.4.p locus=Potri.009G087000 ID=Potri.009G087000.4.v4.1 annot-version=v4.1 ATGGGTGCACCCAAACAGAAATGGACGGCAGAAGAAGAAGCAGCGCTAAAAGCTGGAGTGATTAAGCATGGAGCTGGAAAATGGCGCACGATACTTAAAG ATCCGGAATTTAGTGGTGTCTTGTATCTGCGTTCGAATGTGGACCTTAAGGACAAATGGAGAAACATGAGTGTAATGGTAAATGGGTATGGCTCGAGAGA GAAGCCTAAGTTAGCACCTAAAAGGGTGCACCATGTCCATAGACAGGATGAGAACCTTATGTCTGTTGGCACTGTTCAAAGCGATGAAGATATTCCAGAT GCCAAGGCTCTTCCAGTTAGCAGTGCTGCATTGCCGGTTGTTAATCCGAAGAGAACTACTGTAAGGCTGGATAATCTTATAATGGAGGCAATAACTAGCT TGAAGGAGCCTGGAGGTTCACATAAGACCGCAATTGCTTCATACATAGAGGAACAATATTGGCCACCAAATGACTTTAAGAGGATATTATCAGCTAAATT GAAGTATCTGGCAGCAAATGGTAAACTGATTAAGGTTAAACGGAAGTATAGAATTGCACCTACTTCAGCATTTGCTGAGAGAAGGGTTTCTCCCTTATTC TTTGAAGGAAGACAGAGGATCTCTCCCAAAATTGAAAGGGATGATTTCAATATACTTACAATGTCTCAGATTGATTTGGATCTGGGGAAGATGAGGACTA TGACCGCAGAACAGGCTGCTGAGGTAGCGGCTCGAGCGGTTGCGGAGGCAGAAGCTGCTATAGCAGTAGCTGAAGAGGCGGCAAGGGAGGCGGAGACAGC AGAAGCTGATGCAGAGGCAGCACAAGCATTTGCGGAAGCAGCTATGAAGACACTGAAAGGAAGGACCGCCCCTAAGACGGTTCGAGCTTGA
AA sequence Show only first row Show all	>Potri.009G087000.4 pacid=42770940 polypeptide=Potri.009G087000.4.p locus=Potri.009G087000 ID=Potri.009G087000.4.v4.1 annot-version=v4.1 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMVNGYGSREKPKLAPKRVHHVHRQDENLMSVGTVQSDEDIPD AKALPVSSAALPVVNPKRTTVRLDNLIMEAITSLKEPGGSHKTAIASYIEEQYWPPNDFKRILSAKLKYLAANGKLIKVKRKYRIAPTSAFAERRVSPLF FEGRQRISPKIERDDFNILTMSQIDLDLGKMRTMTAEQAAEVAARAVAEAEAAIAVAEEAAREAETAEADAEAAQAFAEAAMKTLKGRTAPKTVRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.009G087000 [exp]	0	1	SMH901
					Potri.002G088800 [exp]	6.24	0.9041
AT3G27100			unknown protein		Potri.017G069200 [exp]	7.48	0.8547
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Potri.002G016600 [exp]	13.96	0.8224	Pt-EMB1793.1
AT4G26240			unknown protein		Potri.006G153800 [exp]	16.12	0.8566
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.014G159100 [exp]	18.76	0.8526
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Potri.017G041000 [exp]	20.14	0.8735
					Potri.003G153400 [exp]	24.89	0.8607
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.003G095300 [exp]	25.69	0.8295	SYP23.1
					Potri.004G169000 [exp]	27.82	0.8505
AT5G14710			unknown protein		Potri.001G349500 [exp]	28.26	0.8512

Compare expression of checked genes

Potri.009G087000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.