Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrLAT7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19553 675 / 0 Amino acid permease family protein (.1) AT1G31830 494 / 3e-172 Amino acid permease family protein (.1.2) AT5G05630 485 / 2e-168 Amino acid permease family protein (.1) AT1G31820 440 / 3e-151 Amino acid permease family protein (.1) AT3G13620 371 / 5e-124 Amino acid permease family protein (.1) AT1G17120 44 / 0.0002 CAT8 cationic amino acid transporter 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296100 [exp] 856 / 0 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.004G178000 [exp] 490 / 5e-171 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.003G103600 [exp] 469 / 2e-162 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.001G007200 [exp] 384 / 3e-129 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G007300 [exp] 368 / 6e-123 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G378500 [exp] 44 / 0.0003 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009849 [exp] 696 / 0 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10040966 [exp] 695 / 0 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 489 / 3e-170 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 488 / 3e-166 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 465 / 9e-161 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10039180 [exp] 370 / 8e-124 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 350 / 9e-116 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 348 / 4e-115 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10013757 [exp] 0 / 1 AT3G13620 536 / 0.0 Amino acid permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Potri.009G090300.2 pacid=42771957 polypeptide=Potri.009G090300.2.p locus=Potri.009G090300 ID=Potri.009G090300.2.v4.1 annot-version=v4.1 ATGGGTGAAGAGGGAAGTGATGCAGAGAACAAAGCTAAAACAAGTCCAAAACTAACACTATTGCCTCTTATTGCTCTGATATTCTATGATGTATCGGGGG GTCCATTTGGTGTAGAGGATTCTGTGAGGGCTGGAGGTGGCCCTTTATTGTCTTTGCTTGGTTTCTTGATATTCCCTTTAATTTGGAGTATACCAGAAGC TCTAGTCACAGCAGAGCTTGCCACAAGTTTCCCTGGGAATGGTGGGTATGTTATTTGGATATCTTCAGCTTTTGGTCCCTTCTGGGGTTTCCAAGAAGGA TTTTGGAAATGGTTTAGTGGGGTTATGGATAATGCCCTTTACCCTGTGTTGTTTCTTGATTACTTGAAACATTCATTTCCTATTTTTAACCAATCAATAG CTCGAATTCCTGCTCTTTTAGGCATTACAGTTTCTTTGACATATTTGAATTACAGAGGTCTACATATTGTTGGATTTTCAGCAGTTTCCCTTGCTGTTTT TTCACTTTGTCCATTTGTTGTAATGGGTCTTCTTTCCATTCCTCGAATTAGGCCTAAACAATGGCTAGTTGTAGATTTTAAGAAATTAGATTGGAGGGGA TATTTTAATTGCATGTTTTGGAACCTGAATTATTGGGATAAGGCTAGTACTCTAGCAGGGGAGGTTGAAAACCCTAGCAAGACATTCCCAAAGGCACTTT TTGGCGCTGTGATTTTGGTGGTTTCTTCATACTTAATTCCACTTCTTGCTAGCACGGGGGCATTGAAGTCGCCTTCTAGTCAATGGAGTGATGGGTACTT TGCAGAAGTTGGGATGTTGATTGGAGGGGTTTGGCTCAAATGGTGGATCCAAGCAGCTGCTGCTATGTCTAACTTGGGATTGTTTGAAGCAGAAATGAGT GGTGATGCTTTTCAACTTCTTGGTATGAGTGAGATGGGAATGCTTCCATCTATATTTGCTTCAAGGTCCAAATATGGAACTCCCACCTTTAGCATTTTGT GCTCTGCTACTGGAGTAATCTTCCTGTCTTGGATGAGTTTTCAGGAAATCCTGGAATTTCTGAACTTCTTATATGCTATAGGAATGCTCCTTGAGTTTGC GGCTTTCATAAAATTGAGGATAAAGAAGCCAGAACTCCATAGGCCTTATAAAGTTCCCCTGCAAACATTTGGTGCAGCACTGCTTTGCCTGCCTCCTGCA TTGTTACTTGTTCTGGTTATGTGCCTGGCTTCTATGCGGACATTCTTAGTTAGCGGTGTGGTTATTCTTCTGGGGTTCCTCTTATATCCGACTTTAGTTC ATGCCAAGGACAGGAAATGGGCCAAATTTGATACAGAAGAACCGGGATTGCCTTCCAATACATCACGGGAAGAGAACTCGGTTTTCCTACATCCACATCA GCAGGTAGCAGATGAGGCTTCAGTCAGCCTTCTTTCTGATTTGCCATCAACAGAACTGGGCCAGGAAAGCTGTGAAGTTTTGGTGGAAGGAGTTCTAAAA TCCGAATGA
AA sequence Show only first row Show all	>Potri.009G090300.2 pacid=42771957 polypeptide=Potri.009G090300.2.p locus=Potri.009G090300 ID=Potri.009G090300.2.v4.1 annot-version=v4.1 MGEEGSDAENKAKTSPKLTLLPLIALIFYDVSGGPFGVEDSVRAGGGPLLSLLGFLIFPLIWSIPEALVTAELATSFPGNGGYVIWISSAFGPFWGFQEG FWKWFSGVMDNALYPVLFLDYLKHSFPIFNQSIARIPALLGITVSLTYLNYRGLHIVGFSAVSLAVFSLCPFVVMGLLSIPRIRPKQWLVVDFKKLDWRG YFNCMFWNLNYWDKASTLAGEVENPSKTFPKALFGAVILVVSSYLIPLLASTGALKSPSSQWSDGYFAEVGMLIGGVWLKWWIQAAAAMSNLGLFEAEMS GDAFQLLGMSEMGMLPSIFASRSKYGTPTFSILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPELHRPYKVPLQTFGAALLCLPPA LLLVLVMCLASMRTFLVSGVVILLGFLLYPTLVHAKDRKWAKFDTEEPGLPSNTSREENSVFLHPHQQVADEASVSLLSDLPSTELGQESCEVLVEGVLK SE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19553			Amino acid permease family pro...		Potri.009G090300 [exp]	0	1	PtrLAT7
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.012G062300 [exp]	5.29	0.6773
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.004G160400 [exp]	6.40	0.7183
AT3G05010			Protein of unknown function, t...		Potri.013G031200 [exp]	8.30	0.6870
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Potri.017G066900 [exp]	10.00	0.6759
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G013900 [exp]	10.39	0.6954
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	10.58	0.6521	Pt-ERF1.3
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	13.85	0.6454	Pt-CUL1.3
					Potri.012G127000 [exp]	16.06	0.6743
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.003G071700 [exp]	18.33	0.6280	ERF39,ERF1.4
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	29.69	0.6320

Compare expression of checked genes

Potri.009G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.