Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 222 / 1e-71 MYB ATMYB73 myb domain protein 73 (.1) AT5G67300 206 / 1e-65 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT2G23290 201 / 6e-64 MYB ATMYB70 myb domain protein 70 (.1) AT3G50060 193 / 9e-61 MYB ATMYB77 myb domain protein 77 (.1) AT3G55730 176 / 5e-53 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 170 / 8e-51 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 153 / 2e-44 MYB ATMYB25 myb domain protein 25 (.1) AT1G69560 140 / 6e-40 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 138 / 2e-39 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT5G02320 137 / 3e-37 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300200 [exp] 398 / 3e-142 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.014G022500 [exp] 234 / 1e-76 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.002G122600 [exp] 232 / 9e-76 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.007G048900 [exp] 229 / 1e-74 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 217 / 2e-69 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.010G195000 [exp] 184 / 5e-56 AT3G55730 295 / 7e-97 myb domain protein 109 (.1) Potri.008G062700 [exp] 181 / 6e-55 AT3G55730 290 / 7e-95 myb domain protein 109 (.1) Potri.002G128900 [exp] 173 / 7e-54 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.008G070900 [exp] 174 / 8e-54 AT4G37260 173 / 2e-52 myb domain protein 73 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014103 [exp] 231 / 2e-76 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10010238 [exp] 213 / 2e-68 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 211 / 1e-67 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10010260 [exp] 201 / 5e-63 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10030336 [exp] 193 / 6e-60 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10040940 [exp] 178 / 9e-56 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10007503 [exp] 177 / 6e-55 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10021762 [exp] 174 / 1e-53 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10028979 [exp] 172 / 5e-53 AT4G37260 181 / 1e-55 myb domain protein 73 (.1) Lus10032764 [exp] 171 / 1e-52 AT4G37260 182 / 5e-56 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G096000.1 pacid=42771221 polypeptide=Potri.009G096000.1.p locus=Potri.009G096000 ID=Potri.009G096000.1.v4.1 annot-version=v4.1 ATGGATAATAATCGGGTTAAGGGACCATGGAGCCCGGAAGAAGACGATCTGCTGAAGCATTTGGTGATAAAACATGGGCCGCGTAACTGGACGATGATAG CAAGAGCAGTACCGGGCCGATCCGGGAAATCCTGCAGGTTACGATGGTGTAATCAGCTGTCACCGGAGGTGGAGCACAGAGCGTTTACACGCGAAGAAGA TGAGATCATCATCAATGCTCATGCCAAGTATGGTAATAAATGGGCTACCATAGCAAGACTCCTCGATGGACGTACGGACAACGCAATCAAAAATCATTGG AACTCCACGTTAAAGAGGAAATACGCGGACTTGATTGAGAATGATGGAACGGTTAATGAAGATGGAGTGAAGGAGAAATCTGCTAAAACGGGGTCGTCGT CTTCGGTTCACAAGAGGGCTAGTACTCCTTCGGGATCTGACGTCAGTGATGCTGGGTTGCCGGTGACGTCATCTATGCTGGCAAGCGAAAACATGCCAGT TGTAGAAACTGGAATTAGCAACGACGACGTCGGCGTTTCGACTGAACTTACGTTGTCTACTCTGGGGATGGAGTCTGGACAGTTGGGGAGAGATGGGGTT GGTACTAAAGAATTGTTTACCGGAGATGTTGAGAAAACGATGACGTTTGCGCCGGAGTTGTTAGCAGTTATGCAGGAGATGATTAGAAAGGAAGTGAGCA TCTATATGGTCGGGATTGGGAAGAAAAGTAGTGGCTAA
AA sequence Show only first row Show all	>Potri.009G096000.1 pacid=42771221 polypeptide=Potri.009G096000.1.p locus=Potri.009G096000 ID=Potri.009G096000.1.v4.1 annot-version=v4.1 MDNNRVKGPWSPEEDDLLKHLVIKHGPRNWTMIARAVPGRSGKSCRLRWCNQLSPEVEHRAFTREEDEIIINAHAKYGNKWATIARLLDGRTDNAIKNHW NSTLKRKYADLIENDGTVNEDGVKEKSAKTGSSSSVHKRASTPSGSDVSDAGLPVTSSMLASENMPVVETGISNDDVGVSTELTLSTLGMESGQLGRDGV GTKELFTGDVEKTMTFAPELLAVMQEMIRKEVSIYMVGIGKKSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.009G096000 [exp]	0	1
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	9.16	0.7336
AT5G49120			Protein of unknown function (D...		Potri.010G011700 [exp]	10.24	0.7293
AT1G66180			Eukaryotic aspartyl protease f...		Potri.004G085000 [exp]	11.61	0.7212
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.008G091300 [exp]	14.89	0.7183
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	16.00	0.7258
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037800 [exp]	22.75	0.6914
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.002G033400 [exp]	25.37	0.6126	APL2.2
AT5G23350			GRAM domain-containing protein...		Potri.004G068200 [exp]	26.49	0.6852
AT4G18400			unknown protein		Potri.004G133260 [exp]	27.00	0.6227
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.019G095200 [exp]	34.17	0.6875

Compare expression of checked genes

Potri.009G096000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.