Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49670 943 / 0 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT1G26320 109 / 6e-26 Zinc-binding dehydrogenase family protein (.1.2) AT5G16980 106 / 9e-26 Zinc-binding dehydrogenase family protein (.1.2) AT5G16970 108 / 1e-25 AT-AER alkenal reductase (.1) AT5G16990 105 / 1e-24 Zinc-binding dehydrogenase family protein (.1) AT5G16960 105 / 1e-24 Zinc-binding dehydrogenase family protein (.1) AT5G17000 105 / 2e-24 Zinc-binding dehydrogenase family protein (.1) AT5G37980 102 / 1e-23 Zinc-binding dehydrogenase family protein (.1) AT5G38000 101 / 4e-23 Zinc-binding dehydrogenase family protein (.1) AT3G03080 100 / 5e-23 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177700 [exp] 112 / 6e-27 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.004G233800 [exp] 108 / 1e-25 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.017G006000 [exp] 107 / 4e-25 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G005400 [exp] 103 / 8e-24 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.007G143800 [exp] 102 / 2e-23 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005700 [exp] 102 / 3e-23 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 101 / 4e-23 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G002500 [exp] 101 / 5e-23 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1) Potri.017G002700 [exp] 100 / 7e-23 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027904 [exp] 1044 / 0 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10002406 [exp] 1025 / 0 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10004379 [exp] 118 / 1e-28 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 112 / 1e-26 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 112 / 1e-26 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 110 / 4e-26 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 108 / 2e-25 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 106 / 1e-24 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 103 / 1e-23 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10011233 [exp] 101 / 4e-23 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.009G103000.1 pacid=42771570 polypeptide=Potri.009G103000.1.p locus=Potri.009G103000 ID=Potri.009G103000.1.v4.1 annot-version=v4.1 ATGGAAATTAAACCAGGTTTATCAGCTATAGTCACTGGCGGTGCCTCTGGAATCGGGAGAGCGCTTAGTTTAGCTCTTGGAGAGAAGGGGATATTCGTGA CTGTTATTGATTTCTCTGAAGAAAAAGGAAAGGAAGTTGCGTCACTTGTCGAGAAAGAGAATGCCAAATTCCATCCCAATTTGGGATTTCCGTCTGCTCT TTTTATTAGATGCGATGTATCAAAATCAAGAGATTTAGCTGCTGCTTTTGAGAAGCATGTGGCAACATATGGAGGGATGGATATTTGTATTAATGGTGCT GGAATCAGTAATCCCATACCATTTTATGAAGATAAAACAGACGGTACTCATTCGTGGAAGCATACTGTTAATGTGAACTTGCTTGCAGTAATTGATTGTA CTCACCTTGCGATAAACAGTATGCTAGCTGCGCAGAAGCCTGGAGTTATTATAAATTTGGGATCTGCTTCTGGTCTTTATCCAATGTATAATGATCCTAT CTACGCTGGCTCTAAAGGTGGTGTTGTTATGTTCACTAGATCACTTGTTCCGTATAAACGCCGGGGTATACGCATCAATGTGCTTTGCCCTGAGTTTGTC AAAACAGAGATGGGAGAGAAAATCGATTCTAAATTTATTGACATGATGGGAGGCTTTGTTCCTATGAAAATGGTTGTCAAAGGTGCTTTTGAGCTTATCA GTGATGAGAGTAAAGCTGGTTCTTGCCTATGGATTACAAATCGTAGAGGCATGGAGTATTGGCCCACTCCCATGGAAGAAGCAAAATACTTGGCGCGTTC TTCAAATTCCAAAAGAAGAGTGTCATACCAAGCCCCAGTGAACCTTCAACTTCCTCTGAGTTATGAGAAACTAGTTGTTCAGACCTTGAGCCATAATTTT CGCAATGCTACCCGCATAGTGCGCGTACCATTGAGATTACCCATTGGATCACATCAAGTTCTTGTGAAAGTCATTTATGCTGGTGTAAATGCTAGTGATG TGAACTTCAGCTCAGGTCGTTATTTCTCTGGCAAGAACCAAGACCTTACCTCCAGTCTTCCATTTGATGTTGGTTTTGAGGCAGTGGGAATAATTGCAGC AGTGGGGGAATCTGTCACTGACTTGAAAGTTGGCACTCCTGCTGCACTCATGACTTTTGGGAGTTATACTGAATTCACAGTGGTTCCAGCAAAACATATC CTTCCCGTACCTAGACCAGATCCTGAAGTTGTTGCCTTGCTGACTTCAGGGATGACTGCATCAATTGCTCTTGAAAAGTGTGGACAAATGAAATCTGGAG AAGCAGTTGTTGTGACTGCTGCTGCAGGAGGGACTGGTCAATTTGCTGTCCAGCTAGCAAAATTGGCTGGAAATACAGTTGTTGCAACTTGTGGAGGTAA CGAAAAGGCAATTCTTTTAAAACAACTGGGAGTTGATCGAGTCATAGATTATAAAGCTGAAGATATTAAAACGGTTCTAAAAAAGGAGTTTCCAAAAGGT ATTGACATCATCTATGAATCTGTTGGTGGTGACATGTTTGATTTATGCTTGAATGCTTTGGCGATGCACGGACGACTCATTGTGATCGGAATGATTTCTC AGTATCAAGGAGAGCATGGATGGACACCAGCTAATTATACAGGACTCTGTGAGAAGATTTTAGCAAGAAGTCAAACTGTGGCTGGTTTTTTCCTTCTACA ACATACTCACTTGTGGGCACAACATCTAGACAGACTATATAACATGTTCGCTTCTGGAAAGCTCAAGGTTGTGTTAGACCAAAAAAGATTTGACGGCGTC CATTCTGTTGCGGATGCTGTTGAGTACCTTCATTCGGGTAAAAGTGTTGGCAAGGTTGTCGTCTGCATCGATCCAAGCTTCAGTGAACAAAAGTCAAAAT TATGA
AA sequence Show only first row Show all	>Potri.009G103000.1 pacid=42771570 polypeptide=Potri.009G103000.1.p locus=Potri.009G103000 ID=Potri.009G103000.1.v4.1 annot-version=v4.1 MEIKPGLSAIVTGGASGIGRALSLALGEKGIFVTVIDFSEEKGKEVASLVEKENAKFHPNLGFPSALFIRCDVSKSRDLAAAFEKHVATYGGMDICINGA GISNPIPFYEDKTDGTHSWKHTVNVNLLAVIDCTHLAINSMLAAQKPGVIINLGSASGLYPMYNDPIYAGSKGGVVMFTRSLVPYKRRGIRINVLCPEFV KTEMGEKIDSKFIDMMGGFVPMKMVVKGAFELISDESKAGSCLWITNRRGMEYWPTPMEEAKYLARSSNSKRRVSYQAPVNLQLPLSYEKLVVQTLSHNF RNATRIVRVPLRLPIGSHQVLVKVIYAGVNASDVNFSSGRYFSGKNQDLTSSLPFDVGFEAVGIIAAVGESVTDLKVGTPAALMTFGSYTEFTVVPAKHI LPVPRPDPEVVALLTSGMTASIALEKCGQMKSGEAVVVTAAAGGTGQFAVQLAKLAGNTVVATCGGNEKAILLKQLGVDRVIDYKAEDIKTVLKKEFPKG IDIIYESVGGDMFDLCLNALAMHGRLIVIGMISQYQGEHGWTPANYTGLCEKILARSQTVAGFFLLQHTHLWAQHLDRLYNMFASGKLKVVLDQKRFDGV HSVADAVEYLHSGKSVGKVVVCIDPSFSEQKSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Potri.009G103000 [exp]	0	1
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.002G015400 [exp]	14.93	0.7256
AT1G15400			unknown protein		Potri.001G172100 [exp]	15.55	0.6736
AT5G20660			Zn-dependent exopeptidases sup...		Potri.008G039400 [exp]	32.17	0.6089
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Potri.018G128000 [exp]	40.49	0.6291
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.008G009100 [exp]	70.00	0.5863
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.014G120800 [exp]	74.67	0.5988
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.001G436100 [exp]	78.40	0.5837	Pt-AERO1.1
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Potri.014G047300 [exp]	82.52	0.5370
AT2G15910			CSL zinc finger domain-contain...		Potri.009G109100 [exp]	83.16	0.5913
AT5G13200			GRAM domain family protein (.1...		Potri.003G165600 [exp]	85.62	0.5876

Compare expression of checked genes

Potri.009G103000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.