Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHB901,SWI3.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34430 727 / 0 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G21700 171 / 1e-43 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G33610 131 / 4e-32 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT2G47620 118 / 1e-27 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT3G07740 58 / 2e-08 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G16420 56 / 9e-08 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G153300 [exp] 1474 / 0 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G080600 [exp] 174 / 7e-45 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 167 / 2e-42 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.015G100400 [exp] 143 / 2e-35 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G004800 [exp] 138 / 4e-34 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.006G017300 [exp] 62 / 1e-09 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 62 / 1e-09 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 59 / 1e-08 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026334 [exp] 798 / 0 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10023583 [exp] 795 / 0 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 788 / 0 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10042329 [exp] 761 / 0 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 162 / 5e-41 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 160 / 3e-40 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10016043 [exp] 149 / 1e-37 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10025165 [exp] 141 / 2e-34 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10043188 [exp] 135 / 9e-33 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1) Lus10032555 [exp] 134 / 1e-32 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type CL0006 [poplar] [flax] PF16495 [poplar] [flax] SWIRM-assoc_1 SWIRM-associated region 1
Representative CDS sequence Show only first row Show all	>Potri.009G114900.1 pacid=42771961 polypeptide=Potri.009G114900.1.p locus=Potri.009G114900 ID=Potri.009G114900.1.v4.1 annot-version=v4.1 ATGGAAGAGAAACCGGCGGGGAGCTACGCTGACTCGCCGGCGTCAGCTGAGCCTGGACCTTCAAGGCGCCGACCTGGAGGGCACAAAAGGAAAGCGAATT CACTCTCAAATTTTTTCTCTTCACCTTTACCATCGAAACGGCTCACTCGCGAGAAAGCTGCGATCTCTAATCTCTCGAACCATAACGGTCCTTTCACTAG AGCGAGACAAATCCCTAACATTTTGGCTTCTTCGGCGCTTTCAGCGGGCGTGAAGGTCGAGCAGAAAGTAGCTACGGCGGTTCCGGATGCTGCGGCCTTG GTGGAGGAGGAGAGGAGGAGTAAGGTGGAGGAATTGCAAACAGAAATTGAAGCAGAGTTTGAGGTTATTAGATCTCGTGATTCTAATGCTCATATTGTGC CTAGTCATTGTGGTTGGTTTTCATGGACAAAAATTCACCCGCTTGAGGAGCGTTTACTGCCTTCATTCTTTAATGGGAAGTCCCAAAGTCGGACACCGGA TACCTATTTAGAGATACGTAATTGGATCATGAAAAAATTTAATTCTAATCCAAACACTCTTATTGAAGTGAAAGATTTGTCAGAACTTGAAGTTTCAGAC TTAGATGCAAGGCAAGAGGTGCTAGAGTTCTTAGATTATTGGGGATTGATTAACTTTCATCCATTACAATTCGATTCTGCTCCCAATGCTGATGGTGATG AAGCGGCAAAGAAAGATTCATCTCTTGAAAAGTTGTTTTGCTTTGAAGCCATTCAACCATGTCCATCTATTGTTCCTAAACCTAACCTCGCAGCTCCAAC TACATCATCTAGATTGTTTCCTGAGTCGGCAATTGCTGAAGAGTTGGCTAAGCTTGAGGGGCCATCTGTTGAGTACCACTGCAATTCTTGTTCAGCTGAT TGCTCTCGCAAGCGCTACCATTGCCAGAAGCAGGCAGATTATGATTTATGCGCTGATTGCTTTAATAATGGAAAGTTTGGCTCAAACATGTCCTCGTCTG ATTTTATTCTCATGGAGCCTGCTGAGGCTGCTGGTGCAAGTGGTGGAAAGTGGACAGATCAGGAGACTCTACTTCTCCTTGAAGCACTGGAACTTTATAA AGAAAACTGGAATGAGATTGCGGAACATGTTGCCACAAAAACAAAAGCTCAATGTATATTGCACTTTGTTCAAATGCCAATTGAGGATGCCTTTTTTGAC GTCACCAATGATATGAATGGCACTTCCAAAGTAACAGTAGATGCTGATGCAACCGTTGATGAGACATCTGGCCCTAAAGATGTCCTCGATACAAGTGAGA GTAAAACAGGTGCTAGTGAAGATCAACCCCTGACTCCTCCAATGGAAGCTTCAAAACCAGAAGATACAAGTGAAGTAAAAGGTAGTCAGGAAAGTACAGA AAATGAGAAAAGCAGTGAGGTGATTAATGGTCCGGAAATTTCCAAATCAGAAGATGCCAGTGGAGTGAAGGTTAGTGAAGAAATGGGTGAAAATGTTGCA CTCAGAGCTCTTACAGAAGCATTTGAAGCTGTTGGCTATTCACCAACTCCTGAAAACCGACTTTCATTTTCTGAAGTTGGAAATCCTGTCATGGCTTTGG CATCATTTCTGGCAAGATTGGTGGGACCTAATGTTGCTACTGCTTCAGCCCGCTCTTCTTTGAAATCCTTGTCTAGCAACTATCCTGGCATGCAGCTGGC AGCAAGGCATTGCTTTCTTTTGGAAGATCCACCAGAGGAGAGAAAGAAACCATCTGGCAGTGATTGTGTTGCTACTGAAATGGCTGATCATGATGCTCAA AAGGACAAGCAAGAGGAAAAAAACCAGAAGGAGAATAGCCCTACCTCAGGTTTAGGTGATAGAGACCTGTCAGATGATCACAGAGACAAGAAAGTTGGAG ACTCTGTTCCAGAAGAGAAGAAACCACTGGATACATCAAAGGGTGACTCCCCAGAGAAAGTAAATGCTGTAAATGAAGCAGAGACAGCTGTCTCTCACGA GGAAGTTGAACCTTGTAGATCAAAGGAATCTAGCAATTCAGAGTTACCGAAGGACCACACACCTAGTATTGTGAAGGAATCGGATGGGATACCACCCAAG TCAGCGTGTCCACCAAGTTCCTTTAAGGAAACACTGGAAGTATCATCAGCCGAAGAGCATTCTCAGCTTACGGAGGTGGCTAAGGATGTGGATATGGTGT CTGATTTGAAGTCTTCAGAAAAGAATGAGCCTTCTCAATCAGTTGCATCAATGTCAGTTGATGAACACTCTCAAGCTGGTGATGCATCAAAGGATGTAGA CATGGTGTCAGATTCTCTGCCTGCAGACAAGGATGGGTCACAGCAACCAGCAAAATCAAATGCAGGAGACCACTCTCAGCCTACAGAGTCAACAGCAGAT GTAGACATGTTATCTTCACAGCCTTCAGAAGTGAAGCCTCAGGGTCTGAAGGTTGAAAGTGGAGCCACTTCAGAAGAGGGTCCCAAAGATAGTAAGAAAG AGAAGCTTGACAGTGAAGTGATTAAAGATGACAATAAAATTGATAAAATAAAGCGTGCTGCAGTTTCAGCCCTCTCAGCAGCAGCAGTGAAGGCAAAACT TCTTGCAAACCAGGAAGAGGACCAAATCCGACAACTTGCTGCCTCTTTGATAGAGAAGCAGTTACATAAGTTGGAAATGAAGCTAGCCTTCTTTAATGAA ATGGATAGTGTAATAATGAGGGTGAGGGAGCAACTGGACAGGTCAAGGCAGAGACTTTACCAAGAACGAGCTCAGATAATTGCATCCCGACTTGGTTTAC CACCTTCATCTAGAGCAGTGCCACCGTCATTACCTGCCAACAGAATTGCAATGAACTTTGCAAATGCATTTCCGAGGCCTCCGATGAGCATGACTGCCCA AAGGCCACCAATATCAAGACCAATGGGTGCATTGGCTCCTACCCCTGACACATTAGTGTCCACAACAACTACAGCAGGAAATTCAATTCGACCTTCTGGT CAGGAAAAACTTTCTTCAGTTGGGACAAAGTAG
AA sequence Show only first row Show all	>Potri.009G114900.1 pacid=42771961 polypeptide=Potri.009G114900.1.p locus=Potri.009G114900 ID=Potri.009G114900.1.v4.1 annot-version=v4.1 MEEKPAGSYADSPASAEPGPSRRRPGGHKRKANSLSNFFSSPLPSKRLTREKAAISNLSNHNGPFTRARQIPNILASSALSAGVKVEQKVATAVPDAAAL VEEERRSKVEELQTEIEAEFEVIRSRDSNAHIVPSHCGWFSWTKIHPLEERLLPSFFNGKSQSRTPDTYLEIRNWIMKKFNSNPNTLIEVKDLSELEVSD LDARQEVLEFLDYWGLINFHPLQFDSAPNADGDEAAKKDSSLEKLFCFEAIQPCPSIVPKPNLAAPTTSSRLFPESAIAEELAKLEGPSVEYHCNSCSAD CSRKRYHCQKQADYDLCADCFNNGKFGSNMSSSDFILMEPAEAAGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDAFFD VTNDMNGTSKVTVDADATVDETSGPKDVLDTSESKTGASEDQPLTPPMEASKPEDTSEVKGSQESTENEKSSEVINGPEISKSEDASGVKVSEEMGENVA LRALTEAFEAVGYSPTPENRLSFSEVGNPVMALASFLARLVGPNVATASARSSLKSLSSNYPGMQLAARHCFLLEDPPEERKKPSGSDCVATEMADHDAQ KDKQEEKNQKENSPTSGLGDRDLSDDHRDKKVGDSVPEEKKPLDTSKGDSPEKVNAVNEAETAVSHEEVEPCRSKESSNSELPKDHTPSIVKESDGIPPK SACPPSSFKETLEVSSAEEHSQLTEVAKDVDMVSDLKSSEKNEPSQSVASMSVDEHSQAGDASKDVDMVSDSLPADKDGSQQPAKSNAGDHSQPTESTAD VDMLSSQPSEVKPQGLKVESGATSEEGPKDSKKEKLDSEVIKDDNKIDKIKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLHKLEMKLAFFNE MDSVIMRVREQLDRSRQRLYQERAQIIASRLGLPPSSRAVPPSLPANRIAMNFANAFPRPPMSMTAQRPPISRPMGALAPTPDTLVSTTTTAGNSIRPSG QEKLSSVGTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Potri.009G114900 [exp]	0	1	CHB901,SWI3.4
AT5G53620			unknown protein		Potri.012G023200 [exp]	3.16	0.8283
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.016G025300 [exp]	4.24	0.8491
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	6.92	0.8252
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.001G266700 [exp]	8.00	0.8396
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	9.48	0.8298
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.007G081900 [exp]	15.42	0.8230
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	17.54	0.8323
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	19.44	0.8360
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.010G010448 [exp]	20.12	0.7986
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.004G141700 [exp]	21.63	0.8241

Compare expression of checked genes

Potri.009G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.